New Jupyter env, Raven and notebook autodeploy fix #332
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…args Will be used to fix `env.local` not found by `deployment/trigger-deploy-notebook` (notebook deploy job). The platform override is simply for future use, not need for now.
Missing the volume-mount of the destination of the symlink.
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E2E Test ResultsDACCS-iac Pipeline ResultsBuild URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1593/Result : failure BIRDHOUSE_DEPLOY_BRANCH : fix-notebook-deploy-not-found-env.local DACCS_CONFIGS_BRANCH : master PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master PAVICS_SDI_BRANCH : master DESTROY_INFRA_ON_EXIT : true PAVICS_HOST : https://host-140-90.rdext.crim.ca PAVICS-e2e-workflow-tests Pipeline ResultsTests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1146/NOTEBOOK TEST RESULTS |
E2E Test ResultsDACCS-iac Pipeline ResultsBuild URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1594/Result : failure BIRDHOUSE_DEPLOY_BRANCH : fix-notebook-deploy-not-found-env.local DACCS_CONFIGS_BRANCH : master PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master PAVICS_SDI_BRANCH : master DESTROY_INFRA_ON_EXIT : true PAVICS_HOST : https://host-140-126.rdext.crim.ca PAVICS-e2e-workflow-tests Pipeline ResultsTests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1147/NOTEBOOK TEST RESULTS |
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Jun 1, 2023
… and latest of everything else (#115) ## Changes - Jenkins: add RavenPy repo - Re-organize tutorial notebooks on PAVICS: dropped `esgf-compute-api` examples and group all Raven notebooks (RavenWPS and RavenPy) into one folder `raven`. - Jupyter env changes: - Update to python `3.9`, from `3.8` - Adds `esgf-pyclient` for esgf-dap.ipynb (https://github.com/Ouranosinc/pavics-sdi/pull/269) - Adds `xncml` for gen_catalog refactoring (https://github.com/Ouranosinc/pavics-vdb/pull/46) - Adds Globus Personnal Connect to be able to transfer big files in and out of the Jupyter env - Fixes annoying harmless error `ERROR 1: PROJ: proj_create_from_database: Open of /opt/conda/envs/birdy/share/proj failed` - Existing `intake-esm` pin: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/issues/109 - Shrink image by almost 2G - Relevant changes (alphabetical order): ```diff < - birdy=0.8.1=pyh6c4a22f_1 > - birdy=0.8.4=pyh1a96a4e_0 < - cf_xarray=0.7.5=pyhd8ed1ab_0 > - cf_xarray=0.8.0=pyhd8ed1ab_0 < - clisops=0.9.3=pyh1a96a4e_0 > - clisops=0.9.6=pyh1a96a4e_0 < - dask=2022.11.1=pyhd8ed1ab_0 > - dask=2023.5.1=pyhd8ed1ab_0 < - esmf=8.2.0=mpi_mpich_h5a1934d_102 < - esmpy=8.2.0=mpi_mpich_py38h9147699_101 > - esmf=8.4.0=mpi_mpich_hc592774_104 > - esmpy=8.4.0=mpi_mpich_py39h3088dd8_102 < - fiona=1.8.22=py38h85a5e0f_5 > - fiona=1.9.1=py39hbc5ff6d_0 < - flox=0.6.4=pyhd8ed1ab_0 > - flox=0.7.2=pyhd8ed1ab_0 < - gdal=3.6.0=py38h58634bd_13 > - gdal=3.6.2=py39hc6cd174_6 < - owslib=0.27.2=pyhd8ed1ab_1 > - owslib=0.28.1=pyhd8ed1ab_0 # new > - pyogrio=0.5.1=py39hbc5ff6d_0 < - python=3.8.16=he550d4f_1_cpython > - python=3.9.16=h2782a2a_0_cpython < - raven-hydro=3.0.4.322=ha46ed4c_2 < - ravenpy=0.9.0=pyha21a80b_0 > - raven-hydro=0.2.1=py39h8e2dbb5_1 > - ravenpy=0.12.0=py39hf3d152e_2 < - rioxarray=0.13.1=pyhd8ed1ab_0 > - rioxarray=0.14.1=pyhd8ed1ab_0 < - roocs-utils=0.6.3=pyh1a96a4e_0 > - roocs-utils=0.6.4=pyh1a96a4e_0 # new > - seaborn=0.12.2=hd8ed1ab_0 < - xarray=2022.10.0=pyhd8ed1ab_0 > - xarray=2023.1.0=pyhd8ed1ab_0 < - xclim=0.39.0=pyhd8ed1ab_0 > - xclim=0.43.0=py39hf3d152e_1 < - xesmf=0.6.3=pyhd8ed1ab_1 > - xesmf=0.7.1=pyhd8ed1ab_0 # new > - hsclient==0.3.3 ``` ## Test - Deployed as "beta" image in production for bokeh visualization performance regression testing. - Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine. - Jenkins build, all passed: [job-PAVICS-e2e-workflow-tests-new-docker-build-198-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621190/job-PAVICS-e2e-workflow-tests-new-docker-build-198-consoleText.txt) [ravenpy-job-PAVICS-e2e-workflow-tests-new-docker-build-200-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621191/ravenpy-job-PAVICS-e2e-workflow-tests-new-docker-build-200-consoleText.txt) ## Related Issue / Discussion - Matching notebook fixes: - Pavics-sdi: https://github.com/Ouranosinc/pavics-sdi/pull/281 - Finch: https://github.com/bird-house/finch/pull/275 - PAVICS-landing: https://github.com/Ouranosinc/PAVICS-landing/pull/64 - RavenPy: https://github.com/CSHS-CWRA/RavenPy/pull/287 - Deployment to PAVICS: https://github.com/bird-house/birdhouse-deploy/pull/332 - Jenkins-config changes for new RavenPy notebooks: https://github.com/Ouranosinc/jenkins-config/pull/15 - Other issues found while working on this one - https://github.com/Ouranosinc/PAVICS-landing/issues/66 - https://github.com/Ouranosinc/PAVICS-landing/issues/65 ## Additional Information Full diff conda env export: [221130-update230403-230530-1-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621128/221130-update230403-230530-1-conda-env-export.diff.txt) ```diff 9,11c9,12 < - affine=2.3.1=pyhd8ed1ab_0 < - aiobotocore=2.4.0=pyhd8ed1ab_0 < - aiohttp=3.8.3=py38h0a891b7_1 --- > - affine=2.4.0=pyhd8ed1ab_0 > - aiobotocore=2.5.0=pyhd8ed1ab_0 > - aiofiles=22.1.0=pyhd8ed1ab_0 > - aiohttp=3.8.4=py39h72bdee0_0 14c15,16 < - alembic=1.8.1=pyhd8ed1ab_0 --- > - aiosqlite=0.19.0=pyhd8ed1ab_0 > - alembic=1.11.1=pyhd8ed1ab_0 16,18c18,20 < - altair=4.2.0=pyhd8ed1ab_1 < - ansi2html=1.8.0=py38h578d9bd_1 < - anyio=3.6.2=pyhd8ed1ab_0 --- > - altair=5.0.1=pyhd8ed1ab_0 > - ansi2html=1.8.0=py39hf3d152e_1 > - anyio=3.6.1=pyhd8ed1ab_1 22,23c24 < - argon2-cffi-bindings=21.2.0=py38h0a891b7_3 < - arrow-cpp=11.0.0=ha770c72_9_cpu --- > - argon2-cffi-bindings=21.2.0=py39hb9d737c_3 26c27 < - asttokens=2.2.0=pyhd8ed1ab_0 --- > - asttokens=2.2.1=pyhd8ed1ab_0 30,44c31,45 < - attrs=22.1.0=pyh71513ae_1 < - aws-c-auth=0.6.26=hf365957_1 < - aws-c-cal=0.5.21=h48707d8_2 < - aws-c-common=0.8.14=h0b41bf4_0 < - aws-c-compression=0.2.16=h03acc5a_5 < - aws-c-event-stream=0.2.20=h00877a2_4 < - aws-c-http=0.7.6=hf342b9f_0 < - aws-c-io=0.13.19=h5b20300_3 < - aws-c-mqtt=0.8.6=hc4349f7_12 < - aws-c-s3=0.2.7=h909e904_1 < - aws-c-sdkutils=0.1.8=h03acc5a_0 < - aws-checksums=0.1.14=h03acc5a_5 < - aws-crt-cpp=0.19.8=hf7fbfca_12 < - aws-sdk-cpp=1.10.57=h17c43bd_8 < - babel=2.11.0=pyhd8ed1ab_0 --- > - attrs=23.1.0=pyh71513ae_1 > - aws-c-auth=0.6.27=he072965_1 > - aws-c-cal=0.5.26=hf677bf3_1 > - aws-c-common=0.8.19=hd590300_0 > - aws-c-compression=0.2.16=hbad4bc6_7 > - aws-c-event-stream=0.2.20=hb4b372c_7 > - aws-c-http=0.7.7=h2632f9a_4 > - aws-c-io=0.13.21=h9fef7b8_5 > - aws-c-mqtt=0.8.11=h2282364_1 > - aws-c-s3=0.3.0=hcb5a9b2_2 > - aws-c-sdkutils=0.1.9=hbad4bc6_2 > - aws-checksums=0.1.14=hbad4bc6_7 > - aws-crt-cpp=0.20.2=he0fdcb3_0 > - aws-sdk-cpp=1.10.57=h059227d_13 > - babel=2.12.1=pyhd8ed1ab_1 48d48 < - backports.zoneinfo=0.2.1=py38h0a891b7_7 50,51c50,51 < - bcrypt=3.2.2=py38h0a891b7_1 < - beautifulsoup4=4.11.1=pyha770c72_0 --- > - bcrypt=3.2.2=py39hb9d737c_1 > - beautifulsoup4=4.12.2=pyha770c72_0 53,56c53,56 < - birdy=0.8.1=pyh6c4a22f_1 < - bleach=5.0.1=pyhd8ed1ab_0 < - blinker=1.5=pyhd8ed1ab_0 < - blosc=1.21.3=hafa529b_0 --- > - birdy=0.8.4=pyh1a96a4e_0 > - bleach=6.0.0=pyhd8ed1ab_0 > - blinker=1.6.2=pyhd8ed1ab_0 > - blosc=1.21.4=h0f2a231_0 58,62c58,62 < - boltons=21.0.0=pyhd8ed1ab_0 < - boost-cpp=1.78.0=h75c5d50_1 < - boto3=1.24.59=pyhd8ed1ab_0 < - botocore=1.27.59=pyhd8ed1ab_0 < - bottleneck=1.3.5=py38h26c90d9_1 --- > - boltons=23.0.0=pyhd8ed1ab_0 > - boost-cpp=1.78.0=h5adbc97_2 > - boto3=1.26.76=pyhd8ed1ab_0 > - botocore=1.29.76=pyhd8ed1ab_0 > - bottleneck=1.3.7=py39h389d5f1_0 66,67c66 < - brotli-python=1.0.9=py38hfa26641_8 < - brotlipy=0.7.0=py38h0a891b7_1005 --- > - brotlipy=0.7.0=py39hb9d737c_1005 70,72c69,71 < - c-ares=1.18.1=h7f98852_0 < - c-blosc2=2.5.0=h7a311fb_0 < - ca-certificates=2022.12.7=ha878542_0 --- > - c-ares=1.19.1=hd590300_0 > - c-blosc2=2.9.2=hb4ffafa_0 > - ca-certificates=2023.5.7=hbcca054_0 75c74 < - cachetools=5.2.0=pyhd8ed1ab_0 --- > - cachetools=5.3.0=pyhd8ed1ab_0 77c76 < - cartopy=0.21.0=py38hf6c3373_3 --- > - cartopy=0.21.1=py39h6e7ad6e_0 80,82c79,81 < - cdms2=3.1.5=py38hc1ef740_14 < - cdtime=3.1.4=py38hc54c017_7 < - certifi=2022.12.7=pyhd8ed1ab_0 --- > - cdms2=3.1.5=py39h36de48d_15 > - cdtime=3.1.4=py39he83c29a_7 > - certifi=2023.5.7=pyhd8ed1ab_0 84,86c83,85 < - cf_xarray=0.7.5=pyhd8ed1ab_0 < - cffi=1.15.1=py38h4a40e3a_2 < - cfgrib=0.9.10.3=pyhd8ed1ab_0 --- > - cf_xarray=0.8.0=pyhd8ed1ab_0 > - cffi=1.15.1=py39he91dace_3 > - cfgrib=0.9.10.4=pyhd8ed1ab_0 89,90c88,89 < - cftime=1.6.2=py38h26c90d9_1 < - charls=2.3.4=h9c3ff4c_0 --- > - cftime=1.6.2=py39h2ae25f5_1 > - charls=2.4.2=h59595ed_0 96,97c95,96 < - clisops=0.9.3=pyh1a96a4e_0 < - cloudpickle=2.2.0=pyhd8ed1ab_0 --- > - clisops=0.9.6=pyh1a96a4e_0 > - cloudpickle=2.2.1=pyhd8ed1ab_0 100,105c99,104 < - commonmark=0.9.1=py_0 < - configurable-http-proxy=4.5.3=he2f69ee_3 < - contourpy=1.0.6=py38h43d8883_0 < - coverage=6.5.0=py38h0a891b7_1 < - cryptography=40.0.1=py38h3d167d9_0 < - curl=7.88.1=hdc1c0ab_1 --- > - comm=0.1.3=pyhd8ed1ab_0 > - configurable-http-proxy=4.5.4=he2f69ee_2 > - contourpy=1.0.7=py39h4b4f3f3_0 > - coverage=7.2.7=py39hd1e30aa_0 > - cryptography=40.0.2=py39h079d5ae_0 > - curl=8.1.2=h409715c_0 107,111c106,110 < - cytoolz=0.12.0=py38h0a891b7_1 < - dash=2.7.0=pyhd8ed1ab_0 < - dask=2022.11.1=pyhd8ed1ab_0 < - dask-core=2022.11.1=pyhd8ed1ab_0 < - dask-labextension=6.0.0=pyhd8ed1ab_0 --- > - cytoolz=0.12.0=py39hb9d737c_1 > - dash=2.9.3=pyhd8ed1ab_2 > - dask=2023.5.1=pyhd8ed1ab_0 > - dask-core=2023.5.1=pyhd8ed1ab_0 > - dask-labextension=6.1.0=pyhd8ed1ab_0 113c112 < - datashader=0.14.3=pyh1a96a4e_0 --- > - datashader=0.14.4=pyh1a96a4e_0 115c114 < - dav1d=1.0.0=h166bdaf_1 --- > - dav1d=1.2.0=hd590300_0 117c116 < - debugpy=1.6.4=py38hfa26641_0 --- > - debugpy=1.6.7=py39h227be39_0 122c121 < - distarray=2.12.2=pyhd8ed1ab_2 --- > - distarray=2.12.2=pyh050c7b8_4 124c123 < - distributed=2022.11.1=pyhd8ed1ab_0 --- > - distributed=2023.5.1=pyhd8ed1ab_0 127,128c126,127 < - eccodes=2.27.0=h164a9dd_0 < - elfutils=0.186=he364ef2_0 --- > - eccodes=2.28.0=h7513371_1 > - elfutils=0.189=hde5d1a3_0 133,135c132,135 < - esmf=8.2.0=mpi_mpich_h5a1934d_102 < - esmpy=8.2.0=mpi_mpich_py38h9147699_101 < - exceptiongroup=1.0.4=pyhd8ed1ab_0 --- > - esmf=8.4.0=mpi_mpich_hc592774_104 > - esmpy=8.4.0=mpi_mpich_py39h3088dd8_102 > - exceptiongroup=1.1.1=pyhd8ed1ab_0 > - execnet=1.9.0=pyhd8ed1ab_0 137c137 < - expat=2.5.0=h27087fc_0 --- > - expat=2.5.0=hcb278e6_1 140,148c140,147 < - fftw=3.3.10=nompi_hf0379b8_105 < - filelock=3.8.0=pyhd8ed1ab_0 < - findlibs=0.0.2=pyhd8ed1ab_0 < - fiona=1.8.22=py38h85a5e0f_5 < - flask=2.2.2=pyhd8ed1ab_0 < - flask-compress=1.13=pyhd8ed1ab_0 < - flit-core=3.8.0=pyhd8ed1ab_0 < - flox=0.6.4=pyhd8ed1ab_0 < - folium=0.13.0=pyhd8ed1ab_0 --- > - fftw=3.3.10=nompi_hc118613_107 > - filelock=3.12.0=pyhd8ed1ab_0 > - findlibs=0.0.5=pyhd8ed1ab_0 > - fiona=1.9.1=py39hbc5ff6d_0 > - flask=2.3.2=pyhd8ed1ab_0 > - flit-core=3.9.0=pyhd8ed1ab_0 > - flox=0.7.2=pyhd8ed1ab_0 > - folium=0.14.0=pyhd8ed1ab_0 153c152 < - fontconfig=2.14.1=hc2a2eb6_0 --- > - fontconfig=2.14.2=h14ed4e7_0 156c155 < - fonttools=4.38.0=py38h0a891b7_1 --- > - fonttools=4.39.4=py39hd1e30aa_0 160,161c159,160 < - frozenlist=1.3.3=py38h0a891b7_0 < - fsspec=2022.11.0=pyhd8ed1ab_0 --- > - frozenlist=1.3.3=py39hb9d737c_0 > - fsspec=2023.5.0=pyh1a96a4e_0 163c162 < - future=0.18.2=pyhd8ed1ab_6 --- > - future=0.18.3=pyhd8ed1ab_0 165,167c164,166 < - gcsfs=2022.11.0=pyhd8ed1ab_0 < - gdal=3.6.0=py38h58634bd_13 < - geckodriver=0.32.0=h4b87306_0 --- > - gcsfs=2023.5.0=pyhd8ed1ab_0 > - gdal=3.6.2=py39hc6cd174_6 > - geckodriver=0.33.0=hd2f7af9_0 169,170c168,169 < - geopandas=0.12.1=pyhd8ed1ab_1 < - geopandas-base=0.12.1=pyha770c72_1 --- > - geopandas=0.13.0=pyhd8ed1ab_0 > - geopandas-base=0.13.0=pyha770c72_0 173,175c172,174 < - geotiff=1.7.1=ha76d385_4 < - geoviews=1.9.5=pyhd8ed1ab_0 < - geoviews-core=1.9.5=pyha770c72_0 --- > - geotiff=1.7.1=h7a142b4_6 > - geoviews=1.9.6=pyhd8ed1ab_0 > - geoviews-core=1.9.6=pyha770c72_0 178c177 < - giflib=5.2.1=h36c2ea0_2 --- > - giflib=5.2.1=h0b41bf4_3 180,182c179,181 < - gitpython=3.1.29=pyhd8ed1ab_0 < - glib=2.74.1=h6239696_1 < - glib-tools=2.74.1=h6239696_1 --- > - gitpython=3.1.31=pyhd8ed1ab_0 > - glib=2.76.3=hfc55251_0 > - glib-tools=2.76.3=hfc55251_0 185,187c184,186 < - google-api-core=2.10.2=pyhd8ed1ab_0 < - google-auth=2.14.1=pyh1a96a4e_0 < - google-auth-oauthlib=0.7.1=pyhd8ed1ab_0 --- > - google-api-core=2.11.0=pyhd8ed1ab_0 > - google-auth=2.19.0=pyh1a96a4e_0 > - google-auth-oauthlib=1.0.0=pyhd8ed1ab_0 189,198c188,197 < - google-cloud-storage=2.6.0=pyh1a96a4e_0 < - google-crc32c=1.1.2=py38h57c428a_4 < - google-resumable-media=2.4.0=pyhd8ed1ab_0 < - googleapis-common-protos=1.57.0=pyhd8ed1ab_3 < - greenlet=2.0.1=py38hfa26641_0 < - grpc-cpp=1.51.1=h27aab58_3 < - grpcio=1.51.1=py38h8dc9893_3 < - gst-plugins-base=1.21.2=h3e40eee_0 < - gstreamer=1.21.2=hd4edc92_0 < - gstreamer-orc=0.4.33=h166bdaf_0 --- > - google-cloud-storage=2.9.0=pyh1a96a4e_0 > - google-crc32c=1.1.2=py39h8db88ab_4 > - google-resumable-media=2.5.0=pyhd8ed1ab_0 > - googleapis-common-protos=1.57.1=pyhd8ed1ab_0 > - graphite2=1.3.13=h58526e2_1001 > - greenlet=2.0.2=py39h3d6467e_1 > - grpcio=1.54.2=py39h227be39_2 > - 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platformdirs=2.5.2=pyhd8ed1ab_1 < - plotly=5.11.0=pyhd8ed1ab_0 --- > - platformdirs=3.5.1=pyhd8ed1ab_0 > - plotly=5.14.1=pyhd8ed1ab_0 451,453c457,459 < - pooch=1.6.0=pyhd8ed1ab_0 < - poppler=22.11.0=h92391eb_0 < - poppler-data=0.4.11=hd8ed1ab_0 --- > - pooch=1.7.0=pyha770c72_3 > - poppler=23.01.0=h091648b_0 > - poppler-data=0.4.12=hd8ed1ab_0 457,461c463,467 < - pre-commit=2.20.0=py38h578d9bd_1 < - proj=9.1.0=h93bde94_0 < - prometheus_client=0.15.0=pyhd8ed1ab_0 < - prompt-toolkit=3.0.33=pyha770c72_0 < - prompt_toolkit=3.0.33=hd8ed1ab_0 --- > - pre-commit=3.3.2=pyha770c72_0 > - proj=9.1.1=h8ffa02c_2 > - prometheus_client=0.17.0=pyhd8ed1ab_0 > - prompt-toolkit=3.0.38=pyha770c72_0 > - prompt_toolkit=3.0.38=hd8ed1ab_0 463c469 < - protobuf=4.21.12=py38h8dc9893_0 --- > - protobuf=4.21.12=py39h227be39_0 465c471 < - psutil=5.9.4=py38h0a891b7_0 --- > - psutil=5.9.5=py39h72bdee0_0 468c474,476 < - pulseaudio=16.1=h126f2b6_0 --- > - pulseaudio=16.1=hcb278e6_3 > - pulseaudio-client=16.1=h5195f5e_3 > - pulseaudio-daemon=16.1=ha8d29e2_3 470c478 < - pyarrow=11.0.0=py38hf05218d_9_cpu --- > - pyarrow=10.0.1=py39he4327e9_25_cpu 476,478c484,486 < - pycurl=7.45.1=py38he9e1d38_3 < - pydantic=1.10.2=py38h0a891b7_1 < - pydap=3.3.0=pyhd8ed1ab_0 --- > - pycurl=7.45.1=py39h9297c8b_3 > - pydantic=1.10.8=py39hd1e30aa_0 > - pydap=3.4.0=pyhd8ed1ab_0 480,482c488,491 < - pygeos=0.13=py38hafd38ec_2 < - pygments=2.13.0=pyhd8ed1ab_0 < - pyjwt=2.6.0=pyhd8ed1ab_0 --- > - pygeos=0.14=py39hc9151fd_0 > - pygments=2.15.1=pyhd8ed1ab_0 > - pyjwt=2.7.0=pyhd8ed1ab_0 > - pymbolic=2022.2=pyhd8ed1ab_0 485c494,495 < - pynacl=1.5.0=py38h0a891b7_2 --- > - pynacl=1.5.0=py39hb9d737c_2 > - pyogrio=0.5.1=py39hbc5ff6d_0 488,491c498,501 < - pyproj=3.4.0=py38hce0a2d1_2 < - pyqt=5.15.7=py38h7492b6b_2 < - pyqt5-sip=12.11.0=py38hfa26641_2 < - pyrsistent=0.19.2=py38h0a891b7_0 --- > - pyproj=3.5.0=py39hf8a5840_0 > - pyqt=5.15.7=py39h5c7b992_3 > - pyqt5-sip=12.11.0=py39h227be39_3 > - pyrsistent=0.19.3=py39h72bdee0_0 494,497c504,506 < - pyston_lite=2.3.4=py38h0a891b7_1 < - pyston_lite_autoload=2.3.4=pyh44b312d_1 < - pytest=7.2.0=pyhd8ed1ab_2 < - python=3.8.16=he550d4f_1_cpython --- > - pytest=7.3.1=pyhd8ed1ab_0 > - pytest-xdist=3.3.1=pyhd8ed1ab_0 > - python=3.9.16=h2782a2a_0_cpython 499,501c508,510 < - python-eccodes=1.4.2=py38h26c90d9_1 < - python-fastjsonschema=2.16.2=pyhd8ed1ab_0 < - python-json-logger=2.0.1=pyh9f0ad1d_0 --- > - python-eccodes=1.5.1=py39h389d5f1_0 > - python-fastjsonschema=2.17.1=pyhd8ed1ab_0 > - python-json-logger=2.0.7=pyhd8ed1ab_0 503,506c512,515 < - python-tzdata=2022.7=pyhd8ed1ab_0 < - python_abi=3.8=3_cp38 < - pytz=2022.6=pyhd8ed1ab_0 < - pytz-deprecation-shim=0.1.0.post0=py38h578d9bd_3 --- > - python-tzdata=2023.3=pyhd8ed1ab_0 > - python_abi=3.9=3_cp39 > - pytools=2022.1.14=pyhd8ed1ab_0 > - pytz=2023.3=pyhd8ed1ab_0 508,521c517,530 < - pyviz_comms=2.2.1=pyhd8ed1ab_1 < - pywavelets=1.3.0=py38h26c90d9_2 < - pyyaml=6.0=py38h0a891b7_5 < - pyzmq=24.0.1=py38hfc09fa9_1 < - qhull=2020.2=h4bd325d_2 < - qt-main=5.15.6=hf6cd601_5 < - qtconsole=5.4.0=pyhd8ed1ab_0 < - qtconsole-base=5.4.0=pyha770c72_0 < - qtpy=2.3.0=pyhd8ed1ab_0 < - rasterio=1.3.4=py38h485b76c_0 < - raven-hydro=3.0.4.322=ha46ed4c_2 < - ravenpy=0.9.0=pyha21a80b_0 < - re2=2023.02.02=hcb278e6_0 < - readline=8.1.2=h0f457ee_0 --- > - pyviz_comms=2.3.0=pyhd8ed1ab_0 > - pywavelets=1.4.1=py39h389d5f1_0 > - pyyaml=6.0=py39hb9d737c_5 > - pyzmq=25.0.2=py39h0be026e_0 > - qt-main=5.15.8=h5d23da1_6 > - qtconsole=5.4.3=pyhd8ed1ab_0 > - qtconsole-base=5.4.3=pyha770c72_0 > - qtpy=2.3.1=pyhd8ed1ab_0 > - rasterio=1.3.6=py39h09b1985_0 > - raven-hydro=0.2.1=py39h8e2dbb5_1 > - ravenpy=0.12.0=py39hf3d152e_2 > - rdma-core=28.9=h59595ed_1 > - re2=2023.03.02=h8c504da_0 > - readline=8.2=h8228510_1 523c532 < - requests=2.28.1=pyhd8ed1ab_1 --- > - requests=2.31.0=pyhd8ed1ab_0 528,530c537,540 < - rich=12.6.0=pyhd8ed1ab_0 < - rioxarray=0.13.1=pyhd8ed1ab_0 < - roocs-utils=0.6.3=pyh1a96a4e_0 --- > - rfc3339-validator=0.1.4=pyhd8ed1ab_0 > - rfc3986-validator=0.1.1=pyh9f0ad1d_0 > - rioxarray=0.14.1=pyhd8ed1ab_0 > - roocs-utils=0.6.4=pyh1a96a4e_0 532,548c542,560 < - rtree=1.0.1=py38h02d302b_1 < - ruamel.yaml=0.17.21=py38h0a891b7_2 < - ruamel.yaml.clib=0.2.7=py38h0a891b7_0 < - s2n=1.3.41=h3358134_0 < - s3fs=2022.11.0=pyhd8ed1ab_0 < - s3transfer=0.6.0=pyhd8ed1ab_0 < - scikit-image=0.19.3=py38h8f669ce_2 < - scikit-learn=1.1.3=py38h4c4ba11_1 < - scipy=1.8.1=py38h8ce737c_3 < - scp=0.14.4=pyhd8ed1ab_0 < - selenium=4.6.0=pyhd8ed1ab_0 < - semver=2.13.0=pyh9f0ad1d_0 < - send2trash=1.8.0=pyhd8ed1ab_0 < - setuptools=59.8.0=py38h578d9bd_1 < - shapely=1.8.5=py38hafd38ec_2 < - simpervisor=0.4=pyhd8ed1ab_0 < - sip=6.7.5=py38hfa26641_0 --- > - rtree=1.0.1=py39hb102c33_1 > - ruamel.yaml=0.17.30=py39hd1e30aa_0 > - ruamel.yaml.clib=0.2.7=py39h72bdee0_1 > - s2n=1.3.44=h06160fa_0 > - s3fs=2023.5.0=pyhd8ed1ab_0 > - s3transfer=0.6.1=pyhd8ed1ab_0 > - scikit-image=0.20.0=py39h7c7b5a8_1 > - scikit-learn=1.2.2=py39hc236052_2 > - scipy=1.9.1=py39h8ba3f38_0 > - scp=0.14.5=pyhd8ed1ab_0 > - seaborn=0.12.2=hd8ed1ab_0 > - seaborn-base=0.12.2=pyhd8ed1ab_0 > - selenium=4.9.1=pyhd8ed1ab_0 > - semver=3.0.0=pyhd8ed1ab_0 > - send2trash=1.8.2=pyh41d4057_0 > - setuptools=59.8.0=py39hf3d152e_1 > - shapely=2.0.1=py39hc9151fd_0 > - simpervisor=1.0.0=pyhd8ed1ab_0 > - sip=6.7.9=py39h3d6467e_0 552c564 < - snappy=1.1.9=hbd366e4_2 --- > - snappy=1.1.10=h9fff704_0 557,560c569,572 < - sparse=0.13.0=pyhd8ed1ab_0 < - spotpy=1.6.1=pyhd8ed1ab_0 < - sqlalchemy=1.4.44=py38h0a891b7_0 < - sqlite=3.40.0=h4ff8645_0 --- > - sparse=0.14.0=pyhd8ed1ab_0 > - spotpy=1.6.2=pyhd8ed1ab_0 > - sqlalchemy=2.0.15=py39hd1e30aa_0 > - sqlite=3.42.0=h2c6b66d_0 562c574 < - statsmodels=0.13.5=py38h26c90d9_2 --- > - statsmodels=0.14.0=py39h0f8d45d_1 565,566c577,578 < - tenacity=8.1.0=pyhd8ed1ab_0 < - terminado=0.17.0=pyh41d4057_0 --- > - tenacity=8.2.2=pyhd8ed1ab_0 > - terminado=0.17.1=pyh41d4057_0 569c581 < - tifffile=2022.10.10=pyhd8ed1ab_0 --- > - tifffile=2023.4.12=pyhd8ed1ab_0 576,578c588,590 < - tornado=6.1=py38h0a891b7_3 < - tqdm=4.64.1=pyhd8ed1ab_0 < - traitlets=5.6.0=pyhd8ed1ab_0 --- > - tornado=6.3.2=py39hd1e30aa_0 > - tqdm=4.65.0=pyhd8ed1ab_1 > - traitlets=5.9.0=pyhd8ed1ab_0 580,589c592,602 < - trio=0.21.0=py38h578d9bd_0 < - trio-websocket=0.9.2=pyhd8ed1ab_0 < - typing-extensions=4.4.0=hd8ed1ab_0 < - typing_extensions=4.4.0=pyha770c72_0 < - tzcode=2022g=h166bdaf_0 < - tzdata=2022g=h191b570_0 < - tzlocal=4.2=py38h578d9bd_2 < - ujson=5.7.0=py38h8dc9893_0 < - ukkonen=1.0.1=py38h43d8883_3 < - unicodedata2=15.0.0=py38h0a891b7_0 --- > - trio=0.22.0=py39hf3d152e_1 > - trio-websocket=0.10.2=pyhd8ed1ab_0 > - typing-extensions=4.6.2=hd8ed1ab_0 > - typing_extensions=4.6.2=pyha770c72_0 > - tzcode=2023c=h0b41bf4_0 > - tzdata=2023c=h71feb2d_0 > - tzlocal=5.0.1=py39hf3d152e_0 > - ucx=1.14.1=hf587318_1 > - ujson=5.7.0=py39h227be39_0 > - ukkonen=1.0.1=py39hf939315_3 > - unicodedata2=15.0.0=py39hb9d737c_0 591c604 < - urllib3=1.26.13=pyhd8ed1ab_0 --- > - urllib3=1.26.15=pyhd8ed1ab_0 593,594c606,607 < - validators=0.18.2=pyhd3deb0d_0 < - virtualenv=20.17.0=py38h578d9bd_0 --- > - validators=0.20.0=pyhd8ed1ab_0 > - virtualenv=20.23.0=pyhd8ed1ab_0 596,597c609,610 < - watchdog=2.1.9=py38h578d9bd_1 < - wcwidth=0.2.5=pyh9f0ad1d_2 --- > - watchdog=3.0.0=py39hf3d152e_0 > - wcwidth=0.2.6=pyhd8ed1ab_0 600,602c613,615 < - websocket-client=1.4.2=pyhd8ed1ab_0 < - websockets=10.4=py38h0a891b7_1 < - werkzeug=2.2.2=pyhd8ed1ab_0 --- > - websocket-client=1.5.2=pyhd8ed1ab_0 > - websockets=11.0.3=py39hd1e30aa_0 > - werkzeug=2.3.4=pyhd8ed1ab_0 604,606c617,619 < - wheel=0.38.4=pyhd8ed1ab_0 < - widgetsnbextension=4.0.3=pyhd8ed1ab_0 < - wrapt=1.14.1=py38h0a891b7_1 --- > - wheel=0.40.0=pyhd8ed1ab_0 > - widgetsnbextension=4.0.7=pyhd8ed1ab_0 > - wrapt=1.15.0=py39h72bdee0_0 608c621 < - xarray=2022.10.0=pyhd8ed1ab_0 --- > - xarray=2023.1.0=pyhd8ed1ab_0 614c627 < - xclim=0.39.0=pyhd8ed1ab_0 --- > - xclim=0.43.0=py39hf3d152e_1 616c629 < - xesmf=0.6.3=pyhd8ed1ab_1 --- > - xesmf=0.7.1=pyhd8ed1ab_0 618c631 < - xeus-python=0.15.8=py38hfbd4bf9_1 --- > - xeus-python=0.15.9=py39h7633fee_0 621c634 < - xeus-zmq=1.0.2=h0541b36_2 --- > - xeus-zmq=1.0.3=h0541b36_0 622a636 > - xkeyboard-config=2.38=h0b41bf4_0 624c638 < - xlsxwriter=3.0.3=pyhd8ed1ab_0 --- > - xlsxwriter=3.1.2=pyhd8ed1ab_0 630,633c644,647 < - xorg-libice=1.0.10=h7f98852_0 < - xorg-libsm=1.2.3=hd9c2040_1000 < - xorg-libx11=1.7.2=h7f98852_0 < - xorg-libxau=1.0.9=h7f98852_0 --- > - xorg-libice=1.1.1=hd590300_0 > - xorg-libsm=1.2.4=h7391055_0 > - xorg-libx11=1.8.4=h0b41bf4_0 > - xorg-libxau=1.0.11=hd590300_0 636c650 < - xorg-libxext=1.3.4=h7f98852_1 --- > - xorg-libxext=1.3.4=h0b41bf4_2 644c658 < - xorg-xextproto=7.3.0=h7f98852_1002 --- > - xorg-xextproto=7.3.0=h0b41bf4_1003 647c661 < - xrft=1.0.0=pyhd8ed1ab_0 --- > - xrft=1.0.1=pyhd8ed1ab_0 649c663 < - xyzservices=2022.9.0=pyhd8ed1ab_0 --- > - xyzservices=2023.5.0=pyhd8ed1ab_1 650a665 > - y-py=0.5.9=py39h50f1755_0 652,653c667,669 < - yarl=1.8.1=py38h0a891b7_0 < - zarr=2.13.3=pyhd8ed1ab_0 --- > - yarl=1.9.2=py39hd1e30aa_0 > - ypy-websocket=0.8.2=pyhd8ed1ab_0 > - zarr=2.14.2=pyhd8ed1ab_0 656,657c672,673 < - zict=2.2.0=pyhd8ed1ab_0 < - zipp=3.11.0=pyhd8ed1ab_0 --- > - zict=3.0.0=pyhd8ed1ab_0 > - zipp=3.15.0=pyhd8ed1ab_0 659,660c675,676 < - zlib-ng=2.0.6=h166bdaf_0 < - zstd=1.5.2=h6239696_4 --- > - zlib-ng=2.0.7=h0b41bf4_0 > - zstd=1.5.2=h3eb15da_6 662,673c678,701 < - astunparse==1.6.3 < - colour==0.1.5 < - geojson==2.5.0 < - ipython-blocking==0.3.1 < - jupyterlab-logout==0.5.0 < - jupyterlab-tabular-data-editor==1.0.0 < - jupyternotify==0.1.15 < - pixiedust==1.1.19 < - pytest-tornasync==0.6.0.post2 < - xmltodict==0.13.0 < - xncml==0.2 < - xsdata==22.12 --- > - arrow==1.2.3 > - astunparse==1.6.3 > - colour==0.1.5 > - dnspython==2.3.0 > - email-validator==2.0.0.post2 > - fqdn==1.5.1 > - geojson==3.0.1 > - hsclient==0.3.3 > - hsmodels==0.5.5 > - ipython-blocking==0.3.1 > - isodate==0.6.1 > - isoduration==20.11.0 > - jsonpointer==2.3 > - jupyterlab-logout==0.5.0 > - jupyterlab-tabular-data-editor==1.0.0 > - jupyternotify==0.1.15 > - pixiedust==1.1.19 > - pytest-tornasync==0.6.0.post2 > - rdflib==5.0.0 > - uri-template==1.2.0 > - webcolors==1.13 > - xmltodict==0.13.0 > - xncml==0.2 > - xsdata==23.5 ``` Full new conda env export: [230530-1-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621130/230530-1-conda-env-export.yml.txt) ``` name: birdy channels: - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_gnu - affine=2.4.0=pyhd8ed1ab_0 - aiobotocore=2.5.0=pyhd8ed1ab_0 - aiofiles=22.1.0=pyhd8ed1ab_0 - aiohttp=3.8.4=py39h72bdee0_0 - aioitertools=0.11.0=pyhd8ed1ab_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - aiosqlite=0.19.0=pyhd8ed1ab_0 - alembic=1.11.1=pyhd8ed1ab_0 - alsa-lib=1.2.8=h166bdaf_0 - altair=5.0.1=pyhd8ed1ab_0 - ansi2html=1.8.0=py39hf3d152e_1 - anyio=3.6.1=pyhd8ed1ab_1 - aom=3.5.0=h27087fc_0 - appdirs=1.4.4=pyh9f0ad1d_0 - argon2-cffi=21.3.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py39hb9d737c_3 - asciitree=0.3.3=py_2 - astor=0.8.1=pyh9f0ad1d_0 - asttokens=2.2.1=pyhd8ed1ab_0 - async-timeout=4.0.2=pyhd8ed1ab_0 - async_generator=1.10=py_0 - attr=2.5.1=h166bdaf_1 - attrs=23.1.0=pyh71513ae_1 - aws-c-auth=0.6.27=he072965_1 - aws-c-cal=0.5.26=hf677bf3_1 - aws-c-common=0.8.19=hd590300_0 - aws-c-compression=0.2.16=hbad4bc6_7 - aws-c-event-stream=0.2.20=hb4b372c_7 - aws-c-http=0.7.7=h2632f9a_4 - aws-c-io=0.13.21=h9fef7b8_5 - aws-c-mqtt=0.8.11=h2282364_1 - aws-c-s3=0.3.0=hcb5a9b2_2 - aws-c-sdkutils=0.1.9=hbad4bc6_2 - aws-checksums=0.1.14=hbad4bc6_7 - aws-crt-cpp=0.20.2=he0fdcb3_0 - aws-sdk-cpp=1.10.57=h059227d_13 - babel=2.12.1=pyhd8ed1ab_1 - backcall=0.2.0=pyh9f0ad1d_0 - backports=1.0=pyhd8ed1ab_3 - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 - base58=2.1.1=pyhd8ed1ab_0 - bcrypt=3.2.2=py39hb9d737c_1 - beautifulsoup4=4.12.2=pyha770c72_0 - bias_correction=0.4=pyhd8ed1ab_0 - birdy=0.8.4=pyh1a96a4e_0 - bleach=6.0.0=pyhd8ed1ab_0 - blinker=1.6.2=pyhd8ed1ab_0 - blosc=1.21.4=h0f2a231_0 - bokeh=2.4.3=pyhd8ed1ab_3 - boltons=23.0.0=pyhd8ed1ab_0 - boost-cpp=1.78.0=h5adbc97_2 - boto3=1.26.76=pyhd8ed1ab_0 - botocore=1.29.76=pyhd8ed1ab_0 - bottleneck=1.3.7=py39h389d5f1_0 - branca=0.6.0=pyhd8ed1ab_0 - brotli=1.0.9=h166bdaf_8 - brotli-bin=1.0.9=h166bdaf_8 - brotlipy=0.7.0=py39hb9d737c_1005 - brunsli=0.1=h9c3ff4c_0 - bzip2=1.0.8=h7f98852_4 - c-ares=1.19.1=hd590300_0 - c-blosc2=2.9.2=hb4ffafa_0 - ca-certificates=2023.5.7=hbcca054_0 - cached-property=1.5.2=hd8ed1ab_1 - cached_property=1.5.2=pyha770c72_1 - cachetools=5.3.0=pyhd8ed1ab_0 - cairo=1.16.0=ha61ee94_1014 - cartopy=0.21.1=py39h6e7ad6e_0 - cattrs=22.2.0=pyhd8ed1ab_0 - cdat_info=8.2.1=pyhd8ed1ab_2 - cdms2=3.1.5=py39h36de48d_15 - cdtime=3.1.4=py39he83c29a_7 - certifi=2023.5.7=pyhd8ed1ab_0 - certipy=0.1.3=py_0 - cf_xarray=0.8.0=pyhd8ed1ab_0 - cffi=1.15.1=py39he91dace_3 - cfgrib=0.9.10.4=pyhd8ed1ab_0 - cfgv=3.3.1=pyhd8ed1ab_0 - cfitsio=4.2.0=hd9d235c_0 - cftime=1.6.2=py39h2ae25f5_1 - charls=2.4.2=h59595ed_0 - charset-normalizer=2.1.1=pyhd8ed1ab_0 - click=8.1.3=unix_pyhd8ed1ab_2 - click-plugins=1.1.1=py_0 - cligj=0.7.2=pyhd8ed1ab_1 - climpred=2.3.0=pyhd8ed1ab_0 - clisops=0.9.6=pyh1a96a4e_0 - 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numba=0.57.0=py39hb75a051_0 - numcodecs=0.11.0=py39h227be39_1 - numpy=1.23.5=py39h3d75532_0 - numpy_groupies=0.9.22=pyhd8ed1ab_0 - oauthlib=3.2.2=pyhd8ed1ab_0 - openblas=0.3.21=pthreads_h320a7e8_3 - openjpeg=2.5.0=hfec8fc6_2 - openssl=3.1.1=hd590300_0 - orc=1.8.3=hfdbbad2_0 - outcome=1.2.0=pyhd8ed1ab_0 - owslib=0.28.1=pyhd8ed1ab_0 - p11-kit=0.24.1=hc5aa10d_0 - packaging=23.1=pyhd8ed1ab_0 - pamela=1.0.0=py_0 - pandas=1.3.5=py39hde0f152_0 - pandoc=2.19.2=h32600fe_2 - pandocfilters=1.5.0=pyhd8ed1ab_0 - panel=0.14.4=pyhd8ed1ab_0 - parallelio=2.5.10=mpi_mpich_h862c5c2_100 - param=1.13.0=pyh1a96a4e_0 - paramiko=3.2.0=pyhd8ed1ab_0 - parso=0.8.3=pyhd8ed1ab_0 - partd=1.4.0=pyhd8ed1ab_0 - pathos=0.3.0=pyhd8ed1ab_0 - patsy=0.5.3=pyhd8ed1ab_0 - pcre2=10.40=hc3806b6_0 - pexpect=4.8.0=pyh1a96a4e_2 - pickleshare=0.7.5=py_1003 - pillow=9.4.0=py39h2320bf1_1 - pint=0.21=pyhd8ed1ab_0 - pip=23.1.2=pyhd8ed1ab_0 - pixman=0.40.0=h36c2ea0_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0 - platformdirs=3.5.1=pyhd8ed1ab_0 - plotly=5.14.1=pyhd8ed1ab_0 - pluggy=1.0.0=pyhd8ed1ab_5 - ply=3.11=py_1 - pooch=1.7.0=pyha770c72_3 - poppler=23.01.0=h091648b_0 - poppler-data=0.4.12=hd8ed1ab_0 - postgresql=15.2=h3248436_0 - pox=0.3.2=pyhd8ed1ab_0 - ppft=1.7.6.6=pyhd8ed1ab_0 - pre-commit=3.3.2=pyha770c72_0 - proj=9.1.1=h8ffa02c_2 - prometheus_client=0.17.0=pyhd8ed1ab_0 - prompt-toolkit=3.0.38=pyha770c72_0 - prompt_toolkit=3.0.38=hd8ed1ab_0 - properscoring=0.1=py_0 - protobuf=4.21.12=py39h227be39_0 - pscript=0.7.7=pyhd8ed1ab_0 - psutil=5.9.5=py39h72bdee0_0 - pthread-stubs=0.4=h36c2ea0_1001 - ptyprocess=0.7.0=pyhd3deb0d_0 - pulseaudio=16.1=hcb278e6_3 - pulseaudio-client=16.1=h5195f5e_3 - pulseaudio-daemon=16.1=ha8d29e2_3 - pure_eval=0.2.2=pyhd8ed1ab_0 - pyarrow=10.0.1=py39he4327e9_25_cpu - pyasn1=0.4.8=py_0 - pyasn1-modules=0.2.7=py_0 - pycparser=2.21=pyhd8ed1ab_0 - pyct=0.4.6=py_0 - pyct-core=0.4.6=py_0 - pycurl=7.45.1=py39h9297c8b_3 - pydantic=1.10.8=py39hd1e30aa_0 - pydap=3.4.0=pyhd8ed1ab_0 - pydeck=0.8.0=pyhd8ed1ab_0 - pygeos=0.14=py39hc9151fd_0 - pygments=2.15.1=pyhd8ed1ab_0 - pyjwt=2.7.0=pyhd8ed1ab_0 - pymbolic=2022.2=pyhd8ed1ab_0 - pymetalink=6.4=pyhd8ed1ab_0 - pympler=1.0.1=pyhd8ed1ab_0 - pynacl=1.5.0=py39hb9d737c_2 - pyogrio=0.5.1=py39hbc5ff6d_0 - pyopenssl=23.1.1=pyhd8ed1ab_0 - pyparsing=3.0.9=pyhd8ed1ab_0 - pyproj=3.5.0=py39hf8a5840_0 - pyqt=5.15.7=py39h5c7b992_3 - pyqt5-sip=12.11.0=py39h227be39_3 - pyrsistent=0.19.3=py39h72bdee0_0 - pyshp=2.3.1=pyhd8ed1ab_0 - pysocks=1.7.1=pyha2e5f31_6 - pytest=7.3.1=pyhd8ed1ab_0 - pytest-xdist=3.3.1=pyhd8ed1ab_0 - python=3.9.16=h2782a2a_0_cpython - python-dateutil=2.8.2=pyhd8ed1ab_0 - python-eccodes=1.5.1=py39h389d5f1_0 - python-fastjsonschema=2.17.1=pyhd8ed1ab_0 - python-json-logger=2.0.7=pyhd8ed1ab_0 - python-pptx=0.6.21=pyhd8ed1ab_0 - python-tzdata=2023.3=pyhd8ed1ab_0 - python_abi=3.9=3_cp39 - pytools=2022.1.14=pyhd8ed1ab_0 - pytz=2023.3=pyhd8ed1ab_0 - pyu2f=0.1.5=pyhd8ed1ab_0 - pyviz_comms=2.3.0=pyhd8ed1ab_0 - pywavelets=1.4.1=py39h389d5f1_0 - pyyaml=6.0=py39hb9d737c_5 - pyzmq=25.0.2=py39h0be026e_0 - qt-main=5.15.8=h5d23da1_6 - qtconsole=5.4.3=pyhd8ed1ab_0 - qtconsole-base=5.4.3=pyha770c72_0 - qtpy=2.3.1=pyhd8ed1ab_0 - rasterio=1.3.6=py39h09b1985_0 - raven-hydro=0.2.1=py39h8e2dbb5_1 - ravenpy=0.12.0=py39hf3d152e_2 - rdma-core=28.9=h59595ed_1 - re2=2023.03.02=h8c504da_0 - readline=8.2=h8228510_1 - regionmask=0.9.0=pyhd8ed1ab_0 - requests=2.31.0=pyhd8ed1ab_0 - requests-cache=1.0.1=pyhd8ed1ab_0 - requests-magpie=0.2.0=pyhd8ed1ab_0 - requests-oauthlib=1.3.1=pyhd8ed1ab_0 - retrying=1.3.3=py_2 - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - rfc3986-validator=0.1.1=pyh9f0ad1d_0 - rioxarray=0.14.1=pyhd8ed1ab_0 - roocs-utils=0.6.4=pyh1a96a4e_0 - rsa=4.9=pyhd8ed1ab_0 - rtree=1.0.1=py39hb102c33_1 - ruamel.yaml=0.17.30=py39hd1e30aa_0 - ruamel.yaml.clib=0.2.7=py39h72bdee0_1 - s2n=1.3.44=h06160fa_0 - s3fs=2023.5.0=pyhd8ed1ab_0 - s3transfer=0.6.1=pyhd8ed1ab_0 - scikit-image=0.20.0=py39h7c7b5a8_1 - scikit-learn=1.2.2=py39hc236052_2 - scipy=1.9.1=py39h8ba3f38_0 - scp=0.14.5=pyhd8ed1ab_0 - seaborn=0.12.2=hd8ed1ab_0 - seaborn-base=0.12.2=pyhd8ed1ab_0 - selenium=4.9.1=pyhd8ed1ab_0 - semver=3.0.0=pyhd8ed1ab_0 - send2trash=1.8.2=pyh41d4057_0 - setuptools=59.8.0=py39hf3d152e_1 - shapely=2.0.1=py39hc9151fd_0 - simpervisor=1.0.0=pyhd8ed1ab_0 - sip=6.7.9=py39h3d6467e_0 - siphon=0.9=pyhd8ed1ab_2 - six=1.16.0=pyh6c4a22f_0 - smmap=3.0.5=pyh44b312d_0 - snappy=1.1.10=h9fff704_0 - sniffio=1.3.0=pyhd8ed1ab_0 - snuggs=1.4.7=py_0 - sortedcontainers=2.4.0=pyhd8ed1ab_0 - soupsieve=2.3.2.post1=pyhd8ed1ab_0 - sparse=0.14.0=pyhd8ed1ab_0 - spotpy=1.6.2=pyhd8ed1ab_0 - sqlalchemy=2.0.15=py39hd1e30aa_0 - sqlite=3.42.0=h2c6b66d_0 - stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.0=py39h0f8d45d_1 - streamlit=1.8.0=pyhd8ed1ab_0 - tblib=1.7.0=pyhd8ed1ab_0 - tenacity=8.2.2=pyhd8ed1ab_0 - terminado=0.17.1=pyh41d4057_0 - threadpoolctl=3.1.0=pyh8a188c0_0 - threddsclient=0.4.2=py_0 - tifffile=2023.4.12=pyhd8ed1ab_0 - tiledb=2.13.2=hd532e3d_0 - tinycss2=1.2.1=pyhd8ed1ab_0 - tk=8.6.12=h27826a3_0 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.0=pyhd8ed1ab_0 - tornado=6.3.2=py39hd1e30aa_0 - tqdm=4.65.0=pyhd8ed1ab_1 - traitlets=5.9.0=pyhd8ed1ab_0 - traittypes=0.2.1=pyh9f0ad1d_2 - trio=0.22.0=py39hf3d152e_1 - trio-websocket=0.10.2=pyhd8ed1ab_0 - typing-extensions=4.6.2=hd8ed1ab_0 - typing_extensions=4.6.2=pyha770c72_0 - tzcode=2023c=h0b41bf4_0 - tzdata=2023c=h71feb2d_0 - tzlocal=5.0.1=py39hf3d152e_0 - ucx=1.14.1=hf587318_1 - ujson=5.7.0=py39h227be39_0 - ukkonen=1.0.1=py39hf939315_3 - unicodedata2=15.0.0=py39hb9d737c_0 - url-normalize=1.4.3=pyhd8ed1ab_0 - urllib3=1.26.15=pyhd8ed1ab_0 - urlpath=1.2.0=pyhd8ed1ab_0 - validators=0.20.0=pyhd8ed1ab_0 - virtualenv=20.23.0=pyhd8ed1ab_0 - voila=0.4.0=pyhd8ed1ab_0 - watchdog=3.0.0=py39hf3d152e_0 - wcwidth=0.2.6=pyhd8ed1ab_0 - webencodings=0.5.1=py_1 - webob=1.8.7=pyhd8ed1ab_0 - websocket-client=1.5.2=pyhd8ed1ab_0 - websockets=11.0.3=py39hd1e30aa_0 - werkzeug=2.3.4=pyhd8ed1ab_0 - wget=1.20.3=ha35d2d1_1 - wheel=0.40.0=pyhd8ed1ab_0 - widgetsnbextension=4.0.7=pyhd8ed1ab_0 - wrapt=1.15.0=py39h72bdee0_0 - wsproto=1.2.0=pyhd8ed1ab_0 - xarray=2023.1.0=pyhd8ed1ab_0 - xcb-util=0.4.0=h516909a_0 - xcb-util-image=0.4.0=h166bdaf_0 - xcb-util-keysyms=0.4.0=h516909a_0 - xcb-util-renderutil=0.3.9=h166bdaf_0 - xcb-util-wm=0.4.1=h516909a_0 - xclim=0.43.0=py39hf3d152e_1 - xerces-c=3.2.4=h55805fa_1 - xesmf=0.7.1=pyhd8ed1ab_0 - xeus=3.0.5=hac2b420_1 - xeus-python=0.15.9=py39h7633fee_0 - xeus-python-shell=0.5.0=pyhd8ed1ab_0 - xeus-python-shell-raw=0.5.0=pyhd8ed1ab_0 - xeus-zmq=1.0.3=h0541b36_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.38=h0b41bf4_0 - xlrd=2.0.1=pyhd8ed1ab_3 - xlsxwriter=3.1.2=pyhd8ed1ab_0 - xorg-damageproto=1.2.1=h7f98852_1002 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-glproto=1.4.17=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.4=h0b41bf4_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdamage=1.1.5=h7f98852_1 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrandr=1.5.2=h7f98852_1 - xorg-libxrender=0.9.10=h7f98852_1003 - xorg-randrproto=1.5.0=h7f98852_1001 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-util-macros=1.19.3=h7f98852_0 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xrft=1.0.1=pyhd8ed1ab_0 - xskillscore=0.0.24=pyhd8ed1ab_0 - xyzservices=2023.5.0=pyhd8ed1ab_1 - xz=5.2.6=h166bdaf_0 - y-py=0.5.9=py39h50f1755_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.2=py39hd1e30aa_0 - ypy-websocket=0.8.2=pyhd8ed1ab_0 - zarr=2.14.2=pyhd8ed1ab_0 - zeromq=4.3.4=h9c3ff4c_1 - zfp=1.0.0=h27087fc_3 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.15.0=pyhd8ed1ab_0 - zlib=1.2.13=h166bdaf_4 - zlib-ng=2.0.7=h0b41bf4_0 - zstd=1.5.2=h3eb15da_6 - pip: - arrow==1.2.3 - astunparse==1.6.3 - colour==0.1.5 - dnspython==2.3.0 - email-validator==2.0.0.post2 - fqdn==1.5.1 - geojson==3.0.1 - hsclient==0.3.3 - hsmodels==0.5.5 - ipython-blocking==0.3.1 - isodate==0.6.1 - isoduration==20.11.0 - jsonpointer==2.3 - jupyterlab-logout==0.5.0 - jupyterlab-tabular-data-editor==1.0.0 - jupyternotify==0.1.15 - pixiedust==1.1.19 - pytest-tornasync==0.6.0.post2 - rdflib==5.0.0 - uri-template==1.2.0 - webcolors==1.13 - xmltodict==0.13.0 - xncml==0.2 - xsdata==23.5 prefix: /opt/conda/envs/birdy ``` Docker build log [230530-1-buildlogs.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621136/230530-1-buildlogs.txt) ``` Sending build context to Docker daemon 22.02kB Step 1/18 : FROM continuumio/miniconda3 ---> fbedfde8d058 Step 2/18 : RUN conda update conda -n base && conda install mamba -n base -c conda-forge -c defaults && conda clean --all --yes && conda config --set channel_priority strict && wget -qO- https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -C /usr/local -xvj bin/micromamba ---> Using cache ---> 418cc0c03798 Step 3/18 : ENV MAMBA_ROOT_PREFIX="/opt/conda" ---> Using cache ---> cf727f7e31d9 Step 4/18 : RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip patch fonts-humor-sans firefox-esr x11-utils && apt-get clean ---> Using cache ---> c1929f372dc2 Step 5/18 : RUN groupadd --gid 1000 jenkins && useradd --uid 1000 --gid jenkins --create-home jenkins && chmod -R a+rwX /opt/conda ---> Using cache ---> 85378190e665 Step 6/18 : COPY environment.yml /environment.yml ---> c06bfdb4ac56 Step 7/18 : RUN umask 0000 && mamba create --name birdy --channel conda-forge --channel defaults xclim ravenpy python=3.9 --yes && mamba env update --name birdy --file /environment.yml && mamba clean --all --yes ---> Running in 95270a0111d6 Transaction Prefix: /opt/conda/envs/birdy Updating specs: - xclim - ravenpy - python=3.9 Package Version Build Channel Size ────────────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ────────────────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 3kB + _openmp_mutex 4.5 2_gnu conda-forge/linux-64 24kB + affine 2.4.0 pyhd8ed1ab_0 conda-forge/noarch 19kB + appdirs 1.4.4 pyh9f0ad1d_0 conda-forge/noarch 13kB + asttokens 2.2.1 pyhd8ed1ab_0 conda-forge/noarch 28kB + attrs 23.1.0 pyh71513ae_1 conda-forge/noarch 55kB + aws-c-auth 0.6.27 he072965_1 conda-forge/linux-64 102kB + aws-c-cal 0.5.26 hf677bf3_1 conda-forge/linux-64 50kB + aws-c-common 0.8.19 hd590300_0 conda-forge/linux-64 196kB + aws-c-compression 0.2.16 hbad4bc6_7 conda-forge/linux-64 19kB + aws-c-event-stream 0.2.20 hb4b372c_7 conda-forge/linux-64 54kB + aws-c-http 0.7.7 h2632f9a_4 conda-forge/linux-64 192kB + aws-c-io 0.13.21 h9fef7b8_5 conda-forge/linux-64 140kB + aws-c-mqtt 0.8.11 h2282364_1 conda-forge/linux-64 148kB + aws-c-s3 0.3.0 hcb5a9b2_2 conda-forge/linux-64 76kB + aws-c-sdkutils 0.1.9 hbad4bc6_2 conda-forge/linux-64 54kB + aws-checksums 0.1.14 hbad4bc6_7 conda-forge/linux-64 50kB + aws-crt-cpp 0.20.2 he0fdcb3_0 conda-forge/linux-64 319kB + aws-sdk-cpp 1.10.57 h059227d_13 conda-forge/linux-64 4MB + backcall 0.2.0 pyh9f0ad1d_0 conda-forge/noarch 14kB + backports 1.0 pyhd8ed1ab_3 conda-forge/noarch 6kB + backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge/noarch 9kB + bias_correction 0.4 pyhd8ed1ab_0 conda-forge/noarch 8kB + blosc 1.21.4 h0f2a231_0 conda-forge/linux-64 49kB + bokeh 3.1.1 pyhd8ed1ab_0 conda-forge/noarch 6MB + boltons 23.0.0 pyhd8ed1ab_0 conda-forge/noarch 303kB + boost-cpp 1.78.0 h5adbc97_2 conda-forge/linux-64 16MB + bottleneck 1.3.7 py39h389d5f1_0 conda-forge/linux-64 122kB + branca 0.6.0 pyhd8ed1ab_0 conda-forge/noarch 28kB + brotli 1.0.9 h166bdaf_8 conda-forge/linux-64 19kB + brotli-bin 1.0.9 h166bdaf_8 conda-forge/linux-64 20kB + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 496kB + c-ares 1.19.1 hd590300_0 conda-forge/linux-64 113kB + ca-certificates 2023.5.7 hbcca054_0 conda-forge/linux-64 Cached + cairo 1.16.0 ha61ee94_1014 conda-forge/linux-64 2MB + certifi 2023.5.7 pyhd8ed1ab_0 conda-forge/noarch Cached + cf_xarray 0.8.1 pyhd8ed1ab_0 conda-forge/noarch 52kB + cfitsio 4.2.0 hd9d235c_0 …
huard
approved these changes
Jun 1, 2023
mishaschwartz
approved these changes
Jun 1, 2023
E2E Test ResultsDACCS-iac Pipeline ResultsBuild URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1598/Result : failure BIRDHOUSE_DEPLOY_BRANCH : fix-notebook-deploy-not-found-env.local DACCS_CONFIGS_BRANCH : master PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master PAVICS_SDI_BRANCH : master DESTROY_INFRA_ON_EXIT : true PAVICS_HOST : https://host-140-90.rdext.crim.ca Infrastructure deployment failed. Instance has not been destroyed. @matprov |
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Overview
Jupyter env: new version with latest Xclim and RavenPy
See Jupyter docker: new build for xclim, ravenpy, globus personal connect and latest of everything else Ouranosinc/PAVICS-e2e-workflow-tests#115 for more details.
Raven WPS: new version to match with new RavenPy inside the Jupyter env
See Ouranosinc/raven@v0.14.2...v0.18.1 for more details.
Notebook autodeploy: unable to read the
env.localWhen
env.localis a symlink we need to volume-mount the destination of the symlink so it resolves inside the notebook autodeploy container.This will allow notebook autodeploy config variable to be set in
env.local.Also had someone changed the value of
JUPYTERHUB_USER_DATA_DIRinenv.local, it would not have worked without this fix.This is a non breaking change.