fix problem in test; v1.0.0

bioinformatist · Oct 23, 2019 · 83bb2fe · 83bb2fe
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: CrossICC
 Type: Package
 Title: An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
-Version: 0.99.26
+Version: 1.0.0
 Description: CrossICC utilizes an iterative strategy to derive the optimal gene set and cluster number from consensus similarity matrix generated by consensus clustering and it is able to deal with multiple cross platform datasets so that requires no between-dataset normalizations. This package also provides abundant functions for visualization and identifying subtypes of cancer. Specially, many cancer-related analysis methods are embedded to facilitate the clinical translation of the identified cancer subtypes.
 Authors@R: c(
   person('Yu', 'Sun',   email = "[email protected]", role = c('aut', 'cre'), comment = c(ORCID = '0000-0003-4269-7187')),

diff --git a/NEWS b/NEWS
@@ -1,3 +1,6 @@
+Changes in version 1.0.0 (2019-10-22)
+  * Use tempdir() in test to avoid using home dir of bioconductor build machine
+
 Changes in version 0.99.26 (2019-09-23)
   * Use tempdir() in examples and vignette to prevent from contaminating Bioc and users' machine
 

diff --git a/tests/testthat/test-crossicc.R b/tests/testthat/test-crossicc.R
@@ -1,7 +1,7 @@
 context("test-crossicc")
 
 data("demo.platforms")
-CrossICC.obj <- CrossICC(demo.platforms, skip.mfs = TRUE, max.iter = 100, use.shiny = FALSE, cross = "cluster", overwrite = TRUE)
+CrossICC.obj <- CrossICC(demo.platforms, skip.mfs = TRUE, max.iter = 100, use.shiny = FALSE, cross = "cluster", overwrite = TRUE, output.dir = tempdir())
 test_that("CrossICC works", {
   expect_equal(length(CrossICC.obj), 10)
 })