Installation

The Bayesembler runs on both Linux and OS X and is freely available under the MIT License.

Static builds

• Linux x86_64 (latest release)
• OS X x86_64 (will be available soon)

Building from source using CMake

1. Install CMake
2. Install the Boost, Eigen and Bamtools libraries
3. Install the CEM assembler and samtools and set the environment variables CEM_PROCESSSAM_PATH and SAMTOOLS_PATH to the locations of the processsam (part of CEM) and samtools binaries, respectively
4. Download the Bayesembler source code (latest release) or git clone https://github.com/bioinformatics-centre/bayesembler.git
5. Add a CMakeLists.txt file to your src directory (example Bayesembler CMakeLists.txt)
6. mkdir build next to your src directory
7. In build, cmake ../src and make