Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix typo in usage comment #48

Merged
merged 1 commit into from
Aug 22, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -173,7 +173,7 @@ The methods can be used directly through the command line after install:
hdf5_fp32 : HFD5 format, using fp32 precision.
hdf5_fp64 : HFD5 format, using fp64 precision.
--subsample-depth Depth of subsampling of the input BIOM before computing unifrac (required for mode==multi, optional for one-off)
--subsample-replacement [OPTIONAL] Subsample qith or without replacement (default is with)
--subsample-replacement [OPTIONAL] Subsample with or without replacement (default is with)
--n-subsamples [OPTIONAL] if mode==multi, number of subsampled UniFracs to compute (default: 100)
--permanova [OPTIONAL] Number of PERMANOVA permutations to compute (default: 999 with -g, do not compute if 0)
--pcoa [OPTIONAL] Number of PCoA dimensions to compute (default: 10, do not compute if 0)
Expand Down
2 changes: 1 addition & 1 deletion src/su.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ void usage() {
std::cout << " \t\t hdf5_fp64 : HFD5 format, using fp64 precision." << std::endl;
std::cout << " \t\t hdf5_nodist : HFD5 format, no distance matrix. (default if mode==multi)" << std::endl;
std::cout << " --subsample-depth\tDepth of subsampling of the input BIOM before computing unifrac (required for mode==multi, optional for one-off)" << std::endl;
std::cout << " --subsample-replacement\t[OPTIONAL] Subsample qith or without replacement (default is with)" << std::endl;
std::cout << " --subsample-replacement\t[OPTIONAL] Subsample with or without replacement (default is with)" << std::endl;
std::cout << " --n-subsamples\t[OPTIONAL] if mode==multi, number of subsampled UniFracs to compute (default: 100)" << std::endl;
std::cout << " --permanova\t[OPTIONAL] Number of PERMANOVA permutations to compute (default: 999 with -g, do not compute if 0)" << std::endl;
std::cout << " --pcoa\t[OPTIONAL] Number of PCoA dimensions to compute (default: 10, do not compute if 0)" << std::endl;
Expand Down