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Confounders not accepted as string #51

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ahdilmore opened this issue Nov 2, 2023 · 0 comments
Closed

Confounders not accepted as string #51

ahdilmore opened this issue Nov 2, 2023 · 0 comments

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@ahdilmore
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Got this error when testing qadabra yesterday:

Building DAG of jobs... InputFunctionException in rule ancombc in file /home/adilmore/Y/envs/qadabra_env/lib/python3.9/site-packages/qadabra/workflow/rules/diffab.smk, line 23: Error: TypeError: ufunc 'isnan' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe'' Wildcards:

Fixed locally by changing np.isnan to pd.isnull here and here.
yangchen2 added a commit to yangchen2/qadabra that referenced this issue Nov 6, 2023
@yangchen2
Confounders not accepted as string, issue biocore#51
28bfa73
AmandaBirmingham added a commit that referenced this issue Nov 16, 2023
@AmandaBirmingham
Merge pull request #49 from yangchen2/master
b7da617 
PR to address issues #48, #50, and #51
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@gibsramen @ahdilmore