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get_pvalue_tool_columns using p-value columns instead of corrected P-value columns #105

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get_pvalue_tool_columns using p-value columns instead of corrected P-value columns

get_pvalue_tool_columns using p-value columns instead of corrected P-value columns #105

Workflow file for this run

.github/workflows/main.yml at b45ee00
# github.com/snakemake-workflows/dna-seq-varlociraptor/blob/master/.github/workflows/main.yml
name: "Main CI"
on:
pull_request:
branches:
- main
- develop
paths-ignore:
- "README.md"
push:
branches:
- main
- develop
paths-ignore:
- "README.md"
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
persist-credentials: false
fetch-depth: 0
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: qadabra
mamba-version: "*"
channels: conda-forge,defaults,bioconda
channel-priority: true
python-version: "3.9"
- name: Install conda packages
shell: bash -l {0}
run: mamba install snakemake click biom-format pandas numpy cython
- name: Install pip packages
shell: bash -l {0}
run: pip install iow
- name: Install qadabra
shell: bash -l {0}
run: pip install -e .
- name: Run Snakemake
shell: bash -l {0}
run: make snaketest