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62 Open 52 Closed
62 Open 52 Closed
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Issues list

Python older versions comparability
#311 opened Nov 21, 2024 by baobabprince
add bargraph alternative to heatmap enhancement
#305 opened Jul 4, 2024 by amnona
join_experiments() raises as pandas future warning bug
#303 opened Jun 10, 2024 by amnona
add documentation for new functions/modules enhancement
#301 opened May 30, 2024 by amnona
Add permanova support enhancement
#300 opened May 30, 2024 by amnona
command history for save and load enhancement
#299 opened May 30, 2024 by amnona
No documentation for new version?
#294 opened Apr 8, 2024 by DrJStrudwick
New versions not on pypi?
#293 opened Apr 8, 2024 by DrJStrudwick
working with small/negative values bug
#291 opened Apr 4, 2024 by amnona
filter_samples does not work with numpy array for value bug
#290 opened Apr 4, 2024 by amnona
use pandas data frame as metadata input
#288 opened Aug 30, 2023 by baobabprince
add option to drop if exists the new column in join_metadata_fields() enhancement
#285 opened Feb 9, 2023 by amnona
when doing cluster_features for metaphlan output (shotgun metagenomics), need to set different presence threshold
#284 opened Jan 23, 2023 by amnona
filter_samples does not work when supplying values as a numpy array bug
#283 opened Jan 17, 2023 by amnona
missing documentation in the calour .io docs for to/from pandas enhancement
#282 opened Jan 12, 2023 by amnona
set default (white) for missing colors in barx_colors in plot()
#270 opened Jun 29, 2022 by amnona
enable rotation for barx_label_kwargs in plot()
#269 opened Jun 29, 2022 by amnona
raise appropriate error when plotting an empty experiment
#268 opened Jun 10, 2022 by amnona
Installation problems
#267 opened Apr 24, 2022 by baobabprince
Problem with rarifying unnormalized experiments bug
#265 opened Mar 15, 2022 by amnona
raise warning if value does not exist in diff_abundance
#264 opened Dec 1, 2021 by amnona
filter_prevalence() field parameter not working bug
#262 opened Nov 29, 2021 by amnona
enable single value input in filter_by_metadata()
#261 opened Nov 15, 2021 by amnona
norm() for heatmap - maybe supply also a string option for "linear" or "log" enhancement
#259 opened Oct 1, 2021 by amnona
io.read() has the sep='\t' set so cannot re-set it in the sample_metadata_kwargs bug
#258 opened Oct 1, 2021 by amnona
ProTip! What’s not been updated in a month: updated:<2024-11-30.