Add coverage reports

.github/workflows/main.yml

@@ -39,16 +39,16 @@ jobs:
 
       - name: Install conda packages
         shell: bash -l {0}
-        run: mamba install -c conda-forge biom-format patsy pytest xarray scikit-bio flake8 arviz cmdstanpy
+        run: mamba install -c conda-forge biom-format patsy pytest xarray scikit-bio flake8 arviz cmdstanpy pytest-cov
 
       - name: Install BIRDMAn
         shell: bash -l {0}
         run: pip install -e .[dev]
 
       - name: Check style
         shell: bash -l {0}
-        run: flake8 birdman/*.py tests/*.py setup.py
+        run: make stylecheck
 
       - name: Run tests
         shell: bash -l {0}
-        run: pytest --disable-pytest-warnings
+        run: make test

.gitignore

@@ -17,3 +17,4 @@ tests/custom_model
 /build
 docs/_build
 tags
+.coverage*

Makefile

@@ -6,7 +6,7 @@ stylecheck:
 	flake8 birdman/*.py tests/*.py setup.py
 
 pytest:
-	pytest tests
+	pytest --cov-report term-missing --cov=birdman --cov-branch tests
 
 documentation:
 	cd docs && make html