MentaLiST: Backport libxml2 fix to v0.1.x series

recipes/mentalist/0.1.3/build.sh

@@ -0,0 +1,17 @@
+#!/bin/sh
+
+cp -r $SRC_DIR/src/*.jl $PREFIX/bin
+ln -s $PREFIX/bin/MentaLiST.jl $PREFIX/bin/mentalist
+chmod +x $PREFIX/bin/mentalist
+
+julia -e 'Pkg.init()'
+julia -e 'Pkg.add("Suppressor")'
+julia -e 'Pkg.add("ArgParse")'
+julia -e 'Pkg.add("Bio")'
+julia -e 'Pkg.add("OpenGene")'
+julia -e 'Pkg.add("Logging")'
+julia -e 'Pkg.add("Lumberjack")'
+
+rm -f "$PREFIX"/share/julia/site/lib/v*/*.ji
+rm -rf "$PREFIX"/share/julia/site/v*/METADATA
+rm -f "$PREFIX"/share/julia/site/v*/META_BRANCH

recipes/mentalist/0.1.3/meta.yaml

@@ -0,0 +1,37 @@
+{% set name = "MentaLiST" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  fn: {{ name|lower }}-{{ version }}.tar.gz
+  url: https://github.com/WGS-TB/MentaLiST/archive/v{{ version }}.tar.gz
+  sha256: 57874e2168b48c165fc68c2bab41819259ec828e298bc54cbc3da8f3c904c63e
+
+build:
+  number: 1
+  skip: True  # [osx]
+
+requirements:
+  build:
+    - julia 0.5.2
+    - hdf5 {{ CONDA_HDF5 }}*
+    - mpfr
+    - libxml2
+  run:
+    - julia 0.5.2
+    - hdf5 {{ CONDA_HDF5 }}*
+    - mpfr
+    - libxml2
+
+test:
+  commands:
+    - mentalist -h
+
+about:
+  home: https://github.com/WGS-TB/MentaLiST
+  summary: The MLST pipeline developed by the PathOGiST research group.
+  license: MIT
+  license_file: LICENSE