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fix and update r-spieceasi #17148

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Aug 28, 2019
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1 change: 0 additions & 1 deletion build-fail-blacklist
Original file line number Diff line number Diff line change
Expand Up @@ -629,7 +629,6 @@ recipes/r-rBLAST
recipes/r-rubic
recipes/r-scimpute
recipes/r-soap-nmr
recipes/r-spieceasi
recipes/r-xmlrpc
recipes/r-zerone

Expand Down
34 changes: 13 additions & 21 deletions recipes/r-spieceasi/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,15 +1,16 @@
{% set version = '1.0.2' %}
{% set version = '1.0.7' %}

package:
name: r-spieceasi
version: {{ version|replace("-", "_") }}

source:
url: https://github.com/zdk123/SpiecEasi/archive/v1.0.2.tar.gz
sha256: ff8930a01a211ebcdf719336f26d385e92a7515db0cf6a07e50923b9e8dd8e37
url: https://github.com/zdk123/SpiecEasi/archive/v{{ version }}.tar.gz
sha256: 1f72dde985bab2ffee63c4b1e2bf0eb4796243750ecb8f576598408fdaa9d1dd

build:
number: 0
noarch: generic
rpaths:
- lib/R/lib/
- lib/
Expand All @@ -18,37 +19,28 @@ requirements:
build:
- r-base
- r-matrix
- r-huge
- r-huge >=1.3.2
- r-mass
- r-vgam
- r-pulsar

run:
- r-base
- r-matrix
- r-huge
- r-huge >=1.3.2
- r-mass
- r-vgam
- r-pulsar

test:
commands:
- $R -e "library('SpiecEasi')"

about:
home: http://github.com/EESI/themetagenomics
license: 'MIT'
summary: A means to explore the structure of 16S rRNA surveys using a Structural Topic Model
coupled with functional prediction. The user provides an abundance table, sample
metadata, and taxonomy information, and themetagenomics infers associations between
topics and sample features, as well as topics and predicted functional content.
Functional prediction can be accomplished via Tax4Fun (for Silva references) and
PICRUSt (for GreenGeenes references).
license_family: MIT
home: http://github.com/zdk123/SpiecEasi
license: 'GPL (>= 2)'
summary: Estimate networks from the precision matrix of compositional microbial abundance data.
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
extra:
recipe-maintainers:
- MathiasHaudgaard
- FrodePedersen
- ArneKr
- johanneskoester
- bgruening
- daler
- jdblischak
- zdk123