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aquila first version #17129

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merged 3 commits into from
Aug 28, 2019
Merged

aquila first version #17129

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ff2a5f0
first version
Aug 27, 2019
dfbd11f
modify meta for bioconda install
Aug 28, 2019
87e205c
Update meta.yaml
dpryan79 Aug 28, 2019
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45 changes: 45 additions & 0 deletions recipes/aquila/meta.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
{% set name = "aquila" %}
{% set version = "1.0.0" %}


package:
name: "{{ name|lower }}"
version: "{{ version }}"

build:
noarch: python
number: 0
script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "

source:
url: https://github.com/xinzhoucs/Aquila/archive/v1.0.0.tar.gz
sha256: 035da84ffc116ce6a9cf5bdd2d53428efa2d84fd5c9009c94cc9c700410cc542

requirements:
host:
- python >=3
- pip

run:
- python >=3
- samtools
- pysam >=0.15.2
- minimap2
- scipy
- numpy

test:
commands:
- Aquila_step1 --help
- Aquila_step2 --help
- Aquila_clean --help
- Aquila_step1_multilibs --help
- Aquila_assembly_based_variants_call --help
- Aquila_phasing_all_variants --help
- Aquila_step0_sortbam --help
- Aquila_step0_sortbam_multilibs --help

about:
home: https://github.com/maiziex/Aquila
license: MIT
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please include license_file:

And if you have please consider to include a DOI in the extra section.

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I don't have a license_file. thanks

summary: Diploid personal genome assembly and comprehensive variant detection based on linked-reads