Bulk: Add quota_anchor recipe (#50610)

* Add quota_anchor recipe * modify build.sh * add defaults channel * add defaults channel * remove defaults channel * 0.0.1a0 and defaults channels * 0.0.1a0 and defaults channels * 0.0.1a0 and defaults channels * channel defaults * number 1 * number 0 * try remove muscle * try remove recently unused pkg * try add four pkg * try add space * revert * try pin_compatible and 5.1.0 * try pin_compatible and 5.1.0 * try repeat commit yesterday * anchorwave 1.2.3 * anchorwave 1.2.3 * try * remove anchorwave * remove anchorwave * remove all bioinfo pkg * delete plots and add setuptools pathlib * delete plots and add setuptools pathlib * delete plots * final try * repeat the day before yesterday success config * add df -h * ... --------- Co-authored-by: xiaodli <[email protected]>
bioconda · Sep 10, 2024 · 8891916 · 8891916
1 parent 590fbd5
commit 8891916
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diff --git a/recipes/quota_anchor/build.sh b/recipes/quota_anchor/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+$PYTHON -m pip install --no-deps --ignore-installed . -vv
+echo "[software]
+gffread = ${PREFIX}/bin/gffread
+AnchorWave = ${PREFIX}/bin/anchorwave
+diamond = ${PREFIX}/bin/diamond
+blastp = ${PREFIX}/bin/blastp
+makeblastdb = ${PREFIX}/bin/makeblastdb
+muscle = ${PREFIX}/bin/muscle
+mafft = ${PREFIX}/bin/mafft
+yn00 = ${PREFIX}/bin/yn00
+pal2nal = ${PREFIX}/bin/pal2nal.pl " > ${SP_DIR}/quota_anchor/config_file/software_path.ini
diff --git a/recipes/quota_anchor/meta.yaml b/recipes/quota_anchor/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "quota_anchor" %}
+{% set version = "0.0.1a0" %}
+{% set sha256 = "01d8520825fee67f8c73803d3bbe7855291592c064cd2d5712d02e104a71a8fa" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/baoxingsong/quota_Anchor/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3
+    - pip 
+  run:
+    - python >=3
+    - gffread
+    - biopython
+    - blast
+    - diamond
+    - AnchorWave
+    - muscle
+    - mafft
+    - matplotlib-base
+    - pal2nal
+    - paml
+    - plotnine
+    - seaborn
+    - pandas
+    - numpy
+
+
+test:
+  commands:
+    - 'quota_Anchor 2>&1 | grep "usage: quota_Anchor"'
+
+about:
+  home: https://github.com/baoxingsong/quota_Anchor
+  license: MIT
+  summary: 'Strand and WGD aware syntenic gene identification'
+  description: "Strand and WGD aware syntenic gene identification for comparative genomics"
+  dev_url: https://github.com/baoxingsong/quota_Anchor