[ci skip] Merge PR 21459

Merge PR #21459, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
bioconda · Apr 13, 2020 · 5116faa · 5116faa
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diff --git a/recipes/bttoxin_digger/build.sh b/recipes/bttoxin_digger/build.sh
@@ -0,0 +1,21 @@
+#!/bin/sh
+mkdir -p $PREFIX/bin
+mkdir -p $PREFIX/bin/lib
+
+cp BtToxin_Digger.pl $PREFIX/bin/BtToxin_Digger
+cp Scripts/*.pl $PREFIX/bin/
+cp lib/own.pm $PREFIX/bin/lib/
+cp -r BTTCMP_db $PREFIX/bin/BTTCMP_db
+cp -r BTTCMP_models $PREFIX/bin/BTTCMP_models
+
+
+chmod a+x $PREFIX/bin/BtToxin_Digger
+chmod a+x $PREFIX/bin/coreprocess.pl
+chmod a+x $PREFIX/bin/get_genes_table.pl
+chmod a+x $PREFIX/bin/get_all_info_nucl.pl
+chmod a+x $PREFIX/bin/get_all_info_orfs.pl
+chmod a+x $PREFIX/bin/get_all_info_prot.pl
+chmod a+x $PREFIX/bin/lib/own.pm
+
+
+BtToxin_Digger --version
diff --git a/recipes/bttoxin_digger/meta.yaml b/recipes/bttoxin_digger/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "bttoxin_digger" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: '{{ name }}'
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/liaochenlanruo/BtToxin_Digger/archive/v{{ version }}.tar.gz
+  sha256: ff4ad3af68c853339bab2f1942f34c1d39222e64b8daf645b71e9285e8dd78fa
+
+build:
+  number: 0
+  noarch: generic
+
+requirements:
+  host:
+    - perl
+    - perl-bioperl >=1.7.2
+    - perl-file-tee
+
+  run:
+    - blast
+    - hmmer
+    - libsvm
+    - perl-pod-usage
+    - perl-getopt-long
+    - perl-file-tee
+    - pgcgap >=1.0.14
+
+test:
+  commands:
+    - BtToxin_Digger --version
+
+about:
+  home: https://github.com/liaochenlanruo/BtToxin_Digger/blob/master/README.md
+  license: GPLv3
+  license_family: GPL
+  license_file: LICENSE
+  summary: A toxin minging tool for Bacillus thuringiensis
+  dev_url: https://github.com/liaochenlanruo/BtToxin_Digger/tree/master
+
+extra:
+  identifiers:
+    - biotools:bttoxin_digger
+  recipe-maintainers:
+    - liaochenlanruo