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UI fixes #356

Merged
merged 19 commits into from
May 14, 2024
Merged

UI fixes #356

merged 19 commits into from
May 14, 2024

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HadleyKing
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HadleyKing added 19 commits May 2, 2024 21:58
@HadleyKing
Fixes for login
21a77e5 
Changes to be committed:
	modified:   client/.env.example
	modified:   client/src/components/bcodbs/SearchOptions.js
	modified:   server/bcodb/services.py
	modified:   server/tests/fixtures/testing_data.json
	modified:   server/users/apis.py
@HadleyKing
Published BCO Rendering
3c49f09 
Changes to be committed:
	modified:   client/src/components/viewer/cardViews.js
	modified:   client/src/components/viewer/index.js
	modified:   server/bcodb/services.py
@HadleyKing
Ui fixes
30904f9 
Changes to be committed:
	modified:   client/src/App.css
	new file:   client/src/components/About.js
	new file:   client/src/components/FullWidthBox.js
	new file:   client/src/components/Home.js
	new file:   client/src/components/Resources.js
	new file:   client/src/components/ThirdBox.js
	deleted:    client/src/components/about/About.js
	deleted:    client/src/components/about/BCOnexus.js
	deleted:    client/src/components/about/HorizontalHeading.js
	deleted:    client/src/components/about/MeetOurTeam.js
	deleted:    client/src/components/about/MemberInfo.js
	deleted:    client/src/components/about/MemberInfoCard.js
	deleted:    client/src/components/about/OurTeam.js
	deleted:    client/src/components/about/Overview.js
	deleted:    client/src/components/about/SB.js
	deleted:    client/src/components/about/Story.js
	deleted:    client/src/components/about/head.js
	deleted:    client/src/components/about/index.js
	deleted:    client/src/components/home/BcoDb.js
	deleted:    client/src/components/home/BioComputeResources.js
	deleted:    client/src/components/home/Builder.js
	deleted:    client/src/components/home/Documentation.js
	deleted:    client/src/components/home/FdaBox.js
	deleted:    client/src/components/home/Galaxy.js
	deleted:    client/src/components/home/Hive.js
	deleted:    client/src/components/home/Intro.js
	deleted:    client/src/components/home/Specification.js
	deleted:    client/src/components/home/Tsc.js
	deleted:    client/src/components/home/Workshop.js
	deleted:    client/src/components/home/index.js
	deleted:    client/src/components/resources/index.js
	modified:   client/src/routes.js
@HadleyKing
UI Cleanup
9008e30 
Changes to be committed:
	modified:   client/src/App.css
	modified:   client/src/components/About.js
	modified:   client/src/components/FullWidthBox.js
	modified:   client/src/components/Home.js
	modified:   client/src/components/Resources.js
	modified:   client/src/components/ThirdBox.js
	modified:   client/src/components/account/Profile.js
	modified:   client/src/components/account/Servers.js
	modified:   client/src/components/account/index.js
	modified:   client/src/components/account/passwordReset.js
	modified:   client/src/components/quickSearch.js
	new file:   client/src/images/cgc2.png
	modified:   client/src/routes.js
@HadleyKing
Reimplement token reset for bcodb
cb750d9 
Changes to be committed:
	modified:   client/src/components/account/Servers.js
	modified:   client/src/services/auth.service.js
	modified:   client/src/slices/accountSlice.js
	modified:   server/bcodb/apis.py
	modified:   server/bcodb/services.py
	modified:   server/bcodb/urls.py
@HadleyKing
Revamp About, Home, and Resources pages
5b43275 
Changes to be committed:
	deleted:    client/src/components/account/bcodbGroups/dbInfo.js
	deleted:    client/src/components/account/bcodbGroups/editGroup.js
	deleted:    client/src/components/account/bcodbGroups/groups.js
	deleted:    client/src/components/account/bcodbGroups/index.js
	deleted:    client/src/components/account/bcodbGroups/permissions.js
	deleted:    client/src/components/resources/Builder.js
	deleted:    client/src/components/resources/CGC.js
	deleted:    client/src/components/resources/Citations.js
	deleted:    client/src/components/resources/DNAnexus.js
	deleted:    client/src/components/resources/Galaxy.js
	deleted:    client/src/components/resources/Hive.js
	deleted:    client/src/components/resources/Packages.js
	deleted:    client/src/components/resources/Tsc.js
	new file:   client/src/images/swagger.png
	renamed:    client/src/components/About.js -> client/src/pages/About.js
	renamed:    client/src/components/Home.js -> client/src/pages/Home.js
	renamed:    client/src/components/Resources.js -> client/src/pages/Resources.js
	modified:   client/src/routes.js
@HadleyKing
Update MUI
8e75bb7 
Changes to be committed:
	modified:   client/src/components/auth/Login.js
	modified:   client/src/components/auth/PasswordReset.js
	modified:   client/src/components/auth/Register.js
	modified:   client/src/components/bcodbs/SearchOptions.js
	modified:   client/src/components/bcodbs/index.js
	modified:   client/src/components/builder/components.js
	modified:   client/src/components/builder/contibutor.js
	modified:   client/src/components/builder/descriptionDomain.js
	modified:   client/src/components/builder/errorDomain.js
	modified:   client/src/components/builder/executionDomain.js
	modified:   client/src/components/builder/extensionDomain.js
	modified:   client/src/components/builder/index.js
	modified:   client/src/components/builder/ioDomain.js
	modified:   client/src/components/builder/parametricDomain.js
	modified:   client/src/components/builder/preview.js
	modified:   client/src/components/builder/provenanceDomain.js
	modified:   client/src/components/builder/rawJson.js
	modified:   client/src/components/builder/reviewer.js
	modified:   client/src/components/builder/specialFeilds.js
	modified:   client/src/components/builder/treeView.js
	modified:   client/src/components/builder/usabilityDomain.js
	modified:   client/src/components/prefix/PrefixSearch.js
	modified:   client/src/components/prefix/index.js
	modified:   client/src/components/viewer/cardViews.js
	modified:   client/src/components/viewer/index.js
	modified:   client/src/layouts/ObjectNavBar.js
	modified:   client/src/layouts/objectSideBar.js
	modified:   client/src/layouts/shared/AppDropDown.js
	modified:   client/src/layouts/shared/DocDropDown.js
	modified:   client/src/layouts/shared/HelpDropDown.js
	modified:   client/src/layouts/shared/ToolsDropDown.js
@HadleyKing
update profile
a5b3616
@HadleyKing
Fix Builder display
ae05fa4 
Changes to be committed:
	modified:   client/src/components/builder/index.js
@HadleyKing
Changes to accomidate BCO Score
54a289c 
Changes to be committed:
	modified:   client/src/components/builder/executionDomain.js
	modified:   client/src/components/builder/index.js
	modified:   client/src/components/viewer/cardViews.js
	modified:   client/src/layouts/shared/ToolsDropDown.js
	modified:   client/src/pages/Bcodbs.js
	modified:   client/src/slices/bcoSlice.js
@HadleyKing
Align left for citations
a16fd56 
Changes to be committed:
	modified:   client/src/App.css
@HadleyKing
Fixes for Publishing and validating
ab0f61d 
Changes to be committed:
	modified:   client/src/components/builder/executionDomain.js
	modified:   client/src/layouts/objectSideBar.js
	modified:   client/src/slices/bcoSlice.js
@HadleyKing
Add funding sources to about pages
548e9c8 
Changes to be committed:
	modified:   client/src/App.css
	modified:   client/src/pages/About.js
@HadleyKing
Add loading components
6ed76cf 
Changes to be committed:
	modified:   client/src/components/builder/index.js
	modified:   client/src/components/viewer/index.js
	new file:   client/src/images/biocomputing.gif
@HadleyKing
Add loading card for BCOs
2477c7b 
Changes to be committed:
	modified:   client/src/components/builder/components.js
	modified:   client/src/components/builder/errorDomain.js
	modified:   client/src/components/builder/index.js
	modified:   client/src/components/builder/rawJson.js
	modified:   client/src/slices/bcoSlice.js
@HadleyKing
Add loading to bcodb page
4a774ac 
also fixed Execution Domain formatting
Changes to be committed:
	modified:   client/src/components/builder/executionDomain.js
	modified:   client/src/pages/Bcodbs.js
@HadleyKing
Update quickSearch for loading function
00e5eb8 
Changes to be committed:
	modified:   client/src/components/quickSearch.js
@HadleyKing
Login Notice
5982ca9 
Changes to be committed:
	modified:   client/package-lock.json
	modified:   client/package.json
	modified:   client/src/components/account/index.js
	modified:   client/src/components/auth/Login.js
	modified:   client/src/components/auth/PasswordReset.js
	modified:   client/src/components/auth/Register.js
	modified:   client/src/components/builder/index.js
	modified:   client/src/components/prefix/index.js
	modified:   client/src/components/quickSearch.js
	modified:   client/src/components/viewer/index.js
	modified:   client/src/layouts/MainLayout.js
	modified:   client/src/layouts/MainNavBar.js
	modified:   client/src/layouts/ObjectNavBar.js
	modified:   client/src/layouts/ObjectViewLayout.js
	modified:   client/src/pages/Bcodbs.js
	modified:   client/src/routes.js
	modified:   client/src/slices/accountSlice.js
	modified:   client/src/slices/searchSlice.js
@HadleyKing
Expired JWT implemented
c1089bc 
Changes to be committed:
	modified:   client/package-lock.json
	modified:   client/package.json
	modified:   client/src/App.js
	modified:   client/src/components/quickSearch.js
	modified:   client/src/pages/Bcodbs.js
	modified:   client/src/routes.js
	modified:   client/src/slices/accountSlice.js
	modified:   client/src/slices/searchSlice.js
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gitguardian bot commented May 14, 2024

⚠️ GitGuardian has uncovered 1 secret following the scan of your pull request.

Please consider investigating the findings and remediating the incidents. Failure to do so may lead to compromising the associated services or software components.

🔎 Detected hardcoded secret in your pull request
GitGuardian id GitGuardian status Secret Commit Filename
4444564 Triggered Generic High Entropy Secret 21a77e5 client/src/components/bcodbs/SearchOptions.js View secret
🛠 Guidelines to remediate hardcoded secrets
  1. Understand the implications of revoking this secret by investigating where it is used in your code.
  2. Replace and store your secret safely. Learn here the best practices.
  3. Revoke and rotate this secret.
  4. If possible, rewrite git history. Rewriting git history is not a trivial act. You might completely break other contributing developers' workflow and you risk accidentally deleting legitimate data.

To avoid such incidents in the future consider

🦉 GitGuardian detects secrets in your source code to help developers and security teams secure the modern development process. You are seeing this because you or someone else with access to this repository has authorized GitGuardian to scan your pull request.

@HadleyKing HadleyKing merged commit 41cb532 into model_refactor_bcodb May 14, 2024
0 of 2 checks passed
@HadleyKing HadleyKing deleted the ui_fixes branch May 20, 2024 13:31
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@HadleyKing