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Expand Up @@ -46,6 +46,7 @@ Welcome! This is the BioCompute Events page. Workshops are listed on the schedul
<b>Date</b>: Wednesday January 12, 2022 <br><br>
<b>Purpose</b>: The purpose of this workshop is to demonstrate the tools available via the BioCompute Objects Portal, and how they enable interoperability in both research and regulatory review for scientists in the public or private spaces, and especially from the perspective of FDA personnel. As part of the larger goal of improving communication between the FDA and private sector and reducing organizational burden on both ends, this workshop will first introduce how the BioCompute Portal can build BioCompute Objects (BCOs) for workflow capture and reproducibility. The BioCompute Portal provides a framework for supporting workflow capture and improving reproducibility by providing user-friendly tools such as the BioCompute Object Builder (BCOB) that enables the creation of 2791-2020-compliant BCOs without requiring a user to know any code. We will demonstrate how the Portal can be securely used to manage, create, transfer, and publish objects that contain sensitive information. The BioCompute Portal presentation will also include the BioCompute Documentation site to introduce new users and acclimate current users to the newly restructured site. Following the introduction, we will walk through how a new user would sign up for an account on DB, the account activation process, and dashboard preview. This demo will also highlight the difference between a registered users’ dashboard and an unregistered public user’s, including access to user resources (best practices, user guide, etc.). Portal infrastructure could be extended to any company or institution that would like to establish their own private DB using the open-source repository and documentation on GitHub (https://github.com/biocompute-objects/bco_api). This workshop will demonstrate how the BCO framework is integrated into external platforms by showcasing the BCO transfer mechanism(s) from external resources to the Portal via API.
<ul><li>Slides <a href="/docs/Jan2022_BioComputeDatabase&TransferMechanismDevelopmentWorkshop_deck.pdf">here</a></li></ul>
<ul><li>Workshop recording <a href="https://youtu.be/EEgV8R8G4dI">here</a></li></ul>

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<h3>2021</h3>
Expand All @@ -61,6 +62,7 @@ Welcome! This is the BioCompute Events page. Workshops are listed on the schedul

<b>Purpose</b>: Training session showing how Research Objects (RO) can package BioCompute Objects (BCO) for Digital Preservation and Reproducibility. Research Objects (RO) are a machine-readable digital preservation effort that aims to package all constituent elements of an analysis together into one archive with very detailed provenance. Here, Stian Soiland-Reyes, a Technical Architect on the Research Objects project, will describe an example that packages the workflow as a descriptive, human-readable report in the form of a BioCompute Object (BCO), and which bundles everything in an RO "Crate." Stian will explain the Research Objects project, and introduce a tutorial for building an RO-BCO archive. RO-BCOs can be efficient solutions for scaling up data analyses, both for internal record keeping and logistics, and for communicating workflows to outside groups.
<ul><li>Slides <a href="/docs/RO-BCO-Intro_12May2021_Public.pdf">here</a></li></ul>
<ul><li>Workshop Recording <a href="/docs/RO-BCO-Intro_12May2021_Public.pdf">here</a></li></ul>


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