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Merge remote-tracking branch 'pengbinpeluo/agsys' into agsys
Resolved Conflicts: src/agsys/ctsm_interface/AgSysParamReader.F90 src/agsys/science/AgSysPlaceholder.F90
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,147 @@ | ||
| module AgSysCropTypeGeneric | ||
| use AgSysKinds, only : r8 | ||
| use AgSysEnvInputs, only : agsys_env_inputs_type | ||
| use AgSysUtils, only : response_curve_type | ||
| use AgSysPhases, only : agsys_phase_type | ||
| use AgSysExcepUtils, only : iulog, endrun | ||
|
|
||
| implicit none | ||
|
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||
| !!a container type to store the crop type instances | ||
| type, public :: agsys_crop_container_type | ||
| private | ||
| class(agsys_crop_type_generic), allocatable, public :: crop | ||
| end type agsys_crop_container_type | ||
|
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| !!a container type to store all the cultivars of a given crop type | ||
| type, public :: agsys_cultivars_of_crop_type | ||
| private | ||
| class(agsys_crop_type_generic), allocatable, public :: cultivar(:) | ||
| end type agsys_cultivars_of_crop_type | ||
|
|
||
| !----------------------------------------------------------------- | ||
| !!a generic crop type holding parameters that shared by all crops | ||
| type, public :: agsys_crop_type_generic | ||
| private | ||
| !public data members | ||
| integer, public :: croptype | ||
|
|
||
| !phase definition | ||
| type(agsys_phase_type), public :: phases | ||
|
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| !parameters related with phenology | ||
| integer, allocatable, public :: max_days_from_sowing_to_end_of_phase(:) | ||
| real(r8), public :: p_sowing_depth | ||
| real(r8), public :: p_shoot_lag | ||
| real(r8), public :: p_shoot_rate | ||
| real(r8), public :: p_pesw_germ | ||
| type(response_curve_type), public :: rc_tair_tt | ||
| type(response_curve_type), public :: rc_sw_avail_phenol | ||
| type(response_curve_type), public :: rc_sw_emerg_rate | ||
| contains | ||
| procedure :: init | ||
|
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||
| procedure :: vernalization | ||
| procedure :: vern_days | ||
| procedure :: vern_effect | ||
| procedure :: photop_eff | ||
| procedure :: get_stress_phenol | ||
| procedure :: get_stress_phenol_emerging_phase | ||
| procedure :: get_stress_phenol_inductive_phase | ||
| procedure :: get_target_tt_photosensitive_phase | ||
| procedure :: get_target_tt_inductive_phase | ||
| end type agsys_crop_type_generic | ||
|
|
||
| contains | ||
| subroutine init(this) | ||
| type(agsys_crop_type_generic), intent(inout) :: this | ||
| this%p_sowing_depth = 0._r8 | ||
| this%p_shoot_lag = 0._r8 | ||
| this%p_shoot_rate = 0._r8 | ||
| this%p_pesw_germ = 0._r8 | ||
| this%rc_tair_tt%num_pts = 0 | ||
| this%rc_sw_avail_phenol%num_pts = 0 | ||
| this%rc_sw_emerg_rate%num_pts = 0 | ||
| end subroutine init | ||
|
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||
| subroutine vernalization(this, env, cumvd) | ||
| class(agsys_crop_type_generic), intent(in) :: this | ||
| type(agsys_env_inputs_type), intent(in) :: env | ||
| real(r8), intent(inout) :: cumvd | ||
| !do nothing here | ||
| end subroutine vernalization | ||
|
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| function vern_days(this, env) result(dlt_cumvd) | ||
| class(agsys_crop_type_generic), intent(in) :: this | ||
| type(agsys_env_inputs_type), intent(in) :: env | ||
| real(r8) :: dlt_cumvd | ||
| !do nothng here | ||
| end function vern_days | ||
|
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| function vern_effect(this, cumvd) result(vern_eff) | ||
| class(agsys_crop_type_generic), intent(in) :: this | ||
| real(r8), intent(in) :: cumvd | ||
| real(r8) :: vern_eff | ||
| !do nothing here | ||
| end function vern_effect | ||
|
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||
| function photop_effect(this, photoperiod) result(photop_eff) | ||
| class(agsys_crop_type_generic), intent(in) :: this | ||
| real(r8), intent(in) :: photoperiod | ||
| real(r8) :: photop_eff | ||
| !do nothing here | ||
| end function photop_effect | ||
|
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| function get_stress_phenol(this, swdef_phenol) result(stress_phenol) | ||
| class(agsys_crop_type_generic), intent(in) :: this | ||
| real(r8), intend(in) :: swdef_phenol | ||
| real(r8) stress_phenol | ||
| !default stress to crop phenology is water stress | ||
| stress_phenol=swdef_phenol | ||
| end function get_stress_phenol | ||
|
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||
| function get_stress_phenol_inductive_phase(this, env, cumvd, swdef_phenol, nfact_phenol, pfact_phenol) result(stress_phenol) | ||
| class(agsys_crop_type_wheat), intent(in) :: this | ||
| type(agsys_env_inputs_type), intent(in) :: env | ||
| real(r8), intent(in) :: cumvd | ||
| real(r8), intent(in) :: swdef_phenol | ||
| real(r8), intent(in) :: nfact_phenol | ||
| real(r8), intent(in) :: pfact_phenol | ||
| real(r8) :: stress_phenol | ||
| !do nothing here | ||
| character(len=*), parameter :: subname = 'get_stress_phenol_inductive_phase' | ||
| write(iulog, *) "This call to ", subname, " is illegal" | ||
| call endrun(msg="Illegal call!") | ||
| end function get_stress_phenol_inductive_phase | ||
|
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| function get_stress_phenol_emerging_phase(this, env, sw_avail_ratio, cumvd) | ||
| class(agsys_crop_type_wheat), intent(in) :: this | ||
| type(agsys_env_inputs_type), intent(in) :: env | ||
| real(r8), intent(in) :: sw_avail_ratio | ||
| real(r8), intent(in) :: cumvd | ||
| real(r8) :: stress_phenol | ||
|
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| stress_phenol=interpolation(sw_avail_ratio, this%rc_sw_emerg_rate) | ||
| end function get_stress_phenol_emerging_phase | ||
|
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| function get_target_tt_photosensitive_phase(this, env) result(target_tt) | ||
| class (agsys_crop_type_photosensitive), intent(in) :: this | ||
| type (agsys_env_inputs_type), intent(in) :: env | ||
| real(r8) :: target_tt | ||
| !do nothing here | ||
| character(len=*), parameter :: subname = 'get_target_tt_photosensitive_phase' | ||
| write(iulog, *) "This call to ", subname, " is illegal" | ||
| call endrun(msg="Illegal call!") | ||
| end function get_target_tt_photosensitive_phase | ||
|
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| function get_target_tt_inductive_phase(this, cumvd) result(target_tt) | ||
| class(agsys_crop_type_vernalization), intent(in) :: this | ||
| real(r8), intent(in) :: cumvd | ||
| real(r8) :: target_tt | ||
| !do nothing here | ||
| character(len=*), parameter :: subname = 'get_target_tt_inductive_phase' | ||
| write(iulog, *) "This call to ", subname, " is illegal" | ||
| call endrun(msg="Illegal call!") | ||
| end function get_target_tt_inductive_phase | ||
|
|
||
| end module AgSysCropTypeGeneric |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| module AgSysCropTypeMaize | ||
| use AgSysKinds, only : r8 | ||
| use AgSysConstants, only : crop_type_maize | ||
| use AgSysPhases, only : max_str_len_for_phase_def, & | ||
| phase_type_generic, & | ||
| phase_type_germinating, phase_type_emerging, phase_type_photo_sensitive | ||
| use AgSysEnvInputs, only : agsys_env_inputs_type | ||
| use AgSysUtils, only : response_curve_type, interpolation | ||
| use AgSysCropTypePhotoSensitive, only : agsys_crop_type_photosensitive | ||
| implicit none | ||
|
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| type, extends(agsys_crop_type_photosensitive), public :: agsys_crop_type_maize | ||
| private | ||
| !public data members | ||
| real(r8), public :: tt_emerg_to_endjuv | ||
| real(r8), public :: tt_emerg_to_fi | ||
| real(r8), public :: tt_flag_to_flower | ||
| real(r8), public :: tt_flower_to_start_grain | ||
| real(r8), public :: tt_flower_to_maturity | ||
| real(r8), public :: tt_maturity_to_ripe | ||
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| real(r8), public :: potential_kernel_weight | ||
| real(r8), public :: leaf_no_dead_const | ||
| real(r8), public :: leaf_no_dead_slope | ||
| contains | ||
| procedure :: init | ||
|
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| end type agsys_crop_type_maize | ||
| contains | ||
| subroutine init(this) | ||
| type(agsys_crop_type_maize), intent(inout) :: this | ||
|
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| this%croptype = crop_type_maize | ||
|
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| !!!initialize the parameters | ||
| !!!TODO(pb, 2019-11-14) now we intialize the variables to 0, | ||
| !!!but later can initialize them into nan | ||
| this%tt_emerg_to_endjuv = 0._r8 | ||
| this%tt_emerg_to_fi = 0._r8 | ||
| this%tt_flag_to_flower = 0._r8 | ||
| this%tt_flower_to_start_grain = 0._r8 | ||
| this%tt_flower_to_maturity = 0._r8 | ||
| this%tt_maturity_to_ripe = 0._r8 | ||
| this%tt_potential_kernal_weight = 0._r8 | ||
| this%tt_leaf_no_dead_const = 0._r8 | ||
| this%tt_leaf_no_dead_slope = 0._r8 | ||
|
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| !!!initialize the phases | ||
| this%phases%num_phases=11 | ||
| this%phases%stage_name=[character(len=max_str_len_for_phase_def) :: & | ||
| 'sowing', 'germination', 'emergence', 'end_of_juvenile', & | ||
| 'floral_initiation', 'flag_leaf', 'flowering', & | ||
| 'start_grain_fill', 'end_grain_fill', 'maturity', 'harvest_ripe', 'end_crop'] | ||
| this%phases%phase_name=[character(len=max_str_len_for_phase_def) :: & | ||
| 'germinating', 'emerging', 'juvenile', & | ||
| 'photo_sensitive', 'leaf_apperance', 'flag_leaf_to_flowering', & | ||
| 'flowering_to_grain_filling', 'grain_filling', 'maturing', 'maturity_to_harvest_ripe', 'ready_for_harvesting'] | ||
| this%phases%phase_type=[phase_type_germinating, phase_type_emerging, phase_type_generic, & | ||
| phase_type_photo_sensitive, phase_type_generic, phase_type_generic, & | ||
| phase_type_generic, phase_type_generic, phase_type_generic, phase_type_generic, phase_type_generic] | ||
|
|
||
| end subroutine init | ||
| end module AgSysCropTypeMaize |
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