Template BIBBOX application

This container can be installed as BIBBOX APP or standalone.

After the installation follow these instructions

Hints

• approx. time with medium fast internet connection: 5 minutes
• initial user/password: e.g. admin / admin

Install within BIBBOX

Within BIBBOX you can use the BIBBOX to install a lot of software tools. After the installation is finished you can start your application in the dashboard.

Install Environment Variables

List of environment parameters set during installation

• NAME_AS_IN_DOCKER_TEMPLATE_1: ...
• MYSQL_DATABASE_NAME: ...
• MYSQL_DATABASE_USER: ...
• MYSQL_DATABASE_PASSWORD: ...

The default values for the standalone installation are:

• NAME_AS_IN_DOCKER_TEMPLATE_1: Default Value
• MYSQL_DATABASE_NAME: Default Value
• MYSQL_DATABASE_USER: Default Value
• MYSQL_DATABASE_PASSWORD: Default Value

Docker Images Used

• BIBBOX/imagename
• mySQL, offical mySQL container

Standalone Installation

To install the app locally execute the commands:

• Clone the git repository:
  • git clone https://github.com/bibbox/app-template.git
• Change the current directory to app-template:
  • cd app-molgenis/
• Create the directories PATH1, PATH2 and PATH3:
  • mkdir -p PATH1
  • mkdir -p PATH2
  • mkdir -p PATH3
• Change the permission of the directories PATH1, PATH2 and PATH3:
  • chmod -R NUMERIC_VALUE_OF_PERMISSION1 PATH1
  • chmod -R NUMERIC_VALUE_OF_PERMISSION2 PATH2
  • chmod -R NUMERIC_VALUE_OF_PERMISSION3 PATH3
• Create the docker network bibbox-default-network:
  • docker network create bibbox-default-network
• Run docker-compose up in the root folder of the project:
  • docker-compose up -d
• Alternatively on a Linux system run the bash script intsall.sh after cloning and change the working directory to the git repository directory.

Mounted Volumes

• PATH1
• PATH2
• PATH3