Add --local option to Bismark Bowtie2 Wrapper (continuation from PR #1537, part 2) #2425

Job	Run time
Setup cache and determine changed repositories (3.11)	58s
Check file sizes	37s
Lint R scripts (ubuntu-20.04, release)	1m 16s
Lint Python scripts (3.11)	23s
Test tools (0, 3.11)	5m 19s
Test tools (1, 3.11)	8m 5s
Lint tool-list (3.11)	37s
Test tools (2, 3.11)	4m 45s
Test tools (3, 3.11)	5m 26s
Combine chunked test results (3.11)	30s
Check workflow success	1s
Deploy	0s
Report deploy status	0s
	27m 57s

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