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remove history section, will add a changelog next
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bgruening authored Nov 12, 2024
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Expand Up @@ -57,7 +57,7 @@ It is deployed completely differently and gained many new features with many new
- [Users & Passwords](#Users-Passwords)
- [Development](#Development)
- [Requirements](#Requirements)
- [History](#History)
- [Changelog](#Changelog)
- [Support & Bug Reports](#Support-Bug-Reports)


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- [Docker](https://www.docker.io/gettingstarted/#h_installation)
# History <a name="History" /> [[toc]](#toc)
- 0.1: Initial release!
- with Apache2, PostgreSQL and Tool Shed integration
- 0.2: complete new Galaxy stack.
- with nginx, uwsgi, proftpd, docker, supervisord and SLURM
- 0.3: Add Interactive Environments
- IPython in docker in Galaxy in docker
- advanged logging
- 0.4:
- base the image on toolshed/requirements with all required Galaxy dependencies
- use Ansible roles to build large parts of the image
- export the supervisord web interface on port 9002
- enable Galaxy reports webapp
- 15.07:
- `install-biojs` can install BioJS visualisations into Galaxy
- `add-tool-shed` can be used to activate third party Tool Sheds in child Dockerfiles
- many documentation improvements
- RStudio is now part of Galaxy and this Image
- configurable postgres UID/GID by @chambm
- smarter starting of postgres during Tool installations by @shiltemann
- 15.10:
- new Galaxy 15.10 release
- fix https://github.com/bgruening/docker-galaxy-stable/issues/94
- 16.01:
- enable Travis testing for all builds and PR
- offer new [yaml based tool installations](https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/tool_list.yaml.sample)
- enable dynamic UWSGI processes and threads with `-e UWSGI_PROCESSES=2` and `-e UWSGI_THREADS=4`
- enable dynamic Galaxy handlers `-e GALAXY_HANDLER_NUMPROCS=2`
- Addition of a new `lite` mode contributed by @kellrott
- first release with Jupyter integration
- 16.04:
- include a Galaxy-bare mode, enable with `-e BARE=True`
- first release with [HTCondor](https://research.cs.wisc.edu/htcondor/) installed and pre-configured
- 16.07:
- documentation and tests updates for SLURM integration by @mvdbeek
- first version with initial Docker compose support (proftpd ✔️)
- SFTP support by @zfrenchee
- 16.10:
- [HTTPS support](https://github.com/bgruening/docker-galaxy-stable/pull/240 ) by @zfrenchee and @mvdbeek
- 17.01:
- enable Conda dependency resolution by default
- [new Galaxy version](https://docs.galaxyproject.org/en/master/releases/17.01_announce.html)
- more compose work (slurm, postgresql)
- 17.05:
- add PROXY_PREFIX variable to enable automatic configuration of Galaxy running under some prefix (@abretaud)
- enable quota by default (just the funtionality, not any specific value)
- HT-Condor is now supported in compose with semi-autoscaling and BioContainers
- Galaxy Docker Compose is completely under Travis testing and available with SLURM and HT-Condor
- using Docker `build-arg`s for GALAXY_RELEASE and GALAXY_REPO
- 17.09:
- much improved documentation about using Galaxy Docker and an external cluster (@rhpvorderman)
- CVMFS support - mounting in 4TB of pre-build reference data (@chambm)
- Singularity support and tests (compose only)
- more work on K8s support and testing (@jmchilton)
- using .env files to configure the compose setup for SLURM, Condor, K8s, SLURM-Singularity, Condor-Docker
- 18.01:
- tracking the Galaxy release_18.01 branch
- uwsgi work to adopt to changes for 18.01
- remove nodejs-legacy & npm from Dockerfile and install latest version from ansible-extras
- initial galaxy.ini → galaxy.yml integration
- grafana and influxdb container (compose)
- Galaxy telegraf integration to push to influxdb (compose)
- added some documentation (compose)
- 18.05:
- Nothing very special, but a awesome Galaxy release as usual
- 18.09:
- new and more powerful orchestration build script (build-orchestration-images.sh) by @pcm32
- a lot of bug-fixes to the compose setup by @abretaud
- 19.01:
- This is featuring the latest and greatest from the Galaxy community
- Please note that this release will be the last release which is based on `ubuntu:14.04` and PostgreSQL 9.3.
We will migrate to `ubuntu:18.04` and a newer PostgreSQL version in `19.05`. Furthermore, we will not
support old Galaxy tool dependencies.
- 19.05:
- The image is now based on `ubuntu:18.04` (instead of ubuntu:14.04 previously) and PostgreSQL 11.5 (9.3 previously).
See [migration documention](#Postgresql-migration) to migrate the postgresql database from 9.3 to 11.5.
- We not longer support old Galaxy tool dependencies.
- 20.05:
- Featuring Galaxy 20.05
- Completely reworked compose setup
- The default admin password and apikey (`GALAXY_DEFAULT_ADMIN_PASSWORD` and `GALAXY_DEFAULT_ADMIN_KEY`) have changed: the password is now `password` (instead of `admin`) and the apikey `fakekey` (instead of `admin`).
- 20.09:
- Featuring Galaxy 20.09
# Support & Bug Reports <a name="Support-Bug-Reports" /> [[toc]](#toc)
You can file an [github issue](https://github.com/bgruening/docker-galaxy-stable/issues) or ask
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