Metadata Registration LIB

A library for the Study metadata registration tool.

Purpose

This app is being developed as part of the Study Registration Tool prototype for the BiOmics team. It is used by the API, UI and directly by users.

Main functionalities

• API utils: Helper code to simplify calls to the Metadata Registration API and convert formats.
• Data and file utils: Data format conversion and helper to write denormalized files.
• ES utils: Elastic Search helper functions to index/delete studies and more.

Installation

Method 1: install as a package

The package is not on the official PyPi. You can install it running this command for example:

pip install -e git+https://github.com/bedapub/metadata-registration-lib.git@master#egg=metadata_registration_lib

Method 2: clone repository

You can directly clone this repository and manually install the requirements using for example:

pip -f requirements.txt