udpate test dfam db

bebatut · Apr 20, 2023 · d8d8a5e · d8d8a5e
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diff --git a/tools/repeatmasker/test-data/Dfam_partial_test.h5 b/tools/repeatmasker/test-data/Dfam_partial_test.h5
diff --git a/tools/repeatmasker/test-data/README.md b/tools/repeatmasker/test-data/README.md
@@ -1 +1,4 @@
-Dfam_partial_test.h5 was generated from the test dataset in https://github.com/Dfam-consortium/FamDB/ (commit: 6b28b66)
+Dfam_partial_test.h5 was generated from the test dataset in https://github.com/Dfam-consortium/FamDB/ (commit: 20c436d)
+
+`./export_dfam.py --from-tax-dump /path/to/taxonomy_dump/from_ncbi/ --from-hmm test_data/Dfam_partial.hmm --db-version 1.0 Dfam_partial_test.h5`
+
diff --git a/tools/repeatmasker/test-data/small_dfam_up.fasta.cat b/tools/repeatmasker/test-data/small_dfam_up.fasta.cat
@@ -98,6 +98,6 @@ Gap_init rate = 0.03 (1 / 35), avg. gap size = 1.00 (1 / 1)
 ## Total Length: 14220
 ## Total NonMask ( excluding >20bp runs of N/X bases ): 14220
 ## Total NonSub ( excluding all non ACGT bases ):14220
-RepeatMasker version 4.1.2-p1 , default mode
-run with rmblastn version 2.10.0+
-RM Library: CONS-_
+RepeatMasker version 4.1.5 , default mode
+run with rmblastn version 2.13.0+
+RM Library: CONS-Dfam_1.0
diff --git a/tools/repeatmasker/test-data/small_dfam_up.fasta.log b/tools/repeatmasker/test-data/small_dfam_up.fasta.log
@@ -1,4 +1,4 @@
-SW scoret% div.t% del.t% ins.tquery sequencetpos in  query: begintendt(left)trepeattclass/familytpos in repeat: begintendt(left)tID
+SW score	% div.	% del.	% ins.	query sequence	pos in  query: begin	end	(left)	repeat	class/family	pos in repeat: begin	end	(left)	ID
 
 18	0.0	0.0	0.0	scaffold_1	613	632	(13588)	(GT)n	Simple_repeat	1	20	(0)	1
 16	18.3	2.2	2.2	scaffold_1	780	824	(13396)	(ATAATA)n	Simple_repeat	1	45	(0)	2