rename back to lowercase for consistency and planemo

bebatut · Jan 8, 2024 · 4683ab7 · 4683ab7
1 parent cd77dff
commit 4683ab7
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Showing 2 changed files with 4 additions and 10 deletions.
diff --git a/tools/jbrowse2/jbrowse2.py b/tools/jbrowse2/jbrowse2.py
@@ -451,9 +451,7 @@ def process_genomes(self):
             assemblies.append(assem)
             self.genome_names.append(genome_name)
             if self.genome_name is None:
-                self.genome_name = (
-                    genome_name  # first one for all tracks - other than paf
-                )
+                self.genome_name = genome_name  # first one for all tracks - other than paf
             if self.config_json.get("assemblies", None):
                 self.config_json["assemblies"] += assemblies
             else:
@@ -937,17 +935,13 @@ def add_paf(self, data, trackData, pafOpts, **kwargs):
         tId = trackData["label"]
         pgname = pafOpts["genome_label"]
         if len(pgname.split() > 1):
-            pgname = pgname.split()[
-                0
-            ]  # trouble from spacey names in command lines avoidance
+            pgname = pgname.split()[0]  # trouble from spacey names in command lines avoidance
         asstrack, gname = self.make_assembly(pafOpts["genome"], pgname)
         self.genome_names.append(pgname)
         if self.config_json.get("assemblies", None):
             self.config_json["assemblies"].append(asstrack)
         else:
-            self.config_json["assemblies"] = [
-                asstrack,
-            ]
+            self.config_json["assemblies"] = [asstrack,]
 
         style_json = self._prepare_track_style(trackData)
         url = "%s.paf" % (trackData["label"])

diff --git a/tools/jbrowse2/jbrowse2.xml b/tools/jbrowse2/jbrowse2.xml
@@ -1,4 +1,4 @@
- <tool id="jbrowse2" name="JBrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@" profile="22.05">
+ <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@" profile="22.05">
     <description>genome browser</description>
     <macros>
         <import>macros.xml</import>