BUG: fix for #18 with new version of rasusa

beardymcjohnface · May 2, 2024 · 7123bdb · 7123bdb
1 parent d7ea126
commit 7123bdb
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diff --git a/trimnami/workflow/envs/rasusa.yaml b/trimnami/workflow/envs/rasusa.yaml
@@ -4,4 +4,4 @@ channels:
     - bioconda
     - defaults
 dependencies:
-    - rasusa>=0.6.0
+    - rasusa>=1.0.0
diff --git a/trimnami/workflow/rules/rasusa.smk b/trimnami/workflow/rules/rasusa.smk
@@ -20,10 +20,10 @@ rule rasusa:
     shell:
         ("if (( $(wc -c {input} | awk '{{print$1}}') > 200 ))\n then "
             "rasusa "
-                "-i {input} "
                 "-o {output} "
                 "-O g "
                 "{params} "
+                "{input} "
                 "2> {log}\n "
          "else "
             "touch {output}\n "