Merge pull request #1 from bd2kccd/v0.1.0-refactoring

V0.1.0 refactoring

pom.xml

@@ -1,20 +1,21 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
+    <groupId>edu.pitt.dbmi</groupId>
     <artifactId>causal-cmd</artifactId>
-    <groupId>cmu.edu</groupId>
+    <version>0.1.0</version>
     <packaging>jar</packaging>
-    <version>6.0.1-SNAPSHOT</version>
-
     <properties>
-        <maven.compiler.source>1.7</maven.compiler.source>
-        <maven.compiler.target>1.7</maven.compiler.target>
+        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+        <maven.compiler.source>1.8</maven.compiler.source>
+        <maven.compiler.target>1.8</maven.compiler.target>
     </properties>
+
     <build>
         <plugins>
             <plugin>
                 <artifactId>maven-resources-plugin</artifactId>
-                <version>2.6</version>
+                <version>3.0.2</version>
                 <executions>
                     <execution>
                         <id>copy-dist-resources</id>
@@ -37,7 +38,7 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-jar-plugin</artifactId>
-                <version>2.6</version>
+                <version>3.0.2</version>
                 <configuration>
                     <archive>
                         <manifest>
@@ -49,7 +50,7 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-assembly-plugin</artifactId>
-                <version>2.6</version>
+                <version>3.0.0</version>
                 <executions>
                     <execution>
                         <phase>package</phase>
@@ -59,7 +60,7 @@
                         <configuration>
                             <archive>
                                 <manifest>
-                                    <mainClass>edu.cmu.tetrad.cli.CausalCmdApplication</mainClass>
+                                    <mainClass>edu.pitt.dbmi.causal.cmd.CausalCmdApplication</mainClass>
                                     <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                                 </manifest>
                             </archive>
@@ -87,28 +88,28 @@
             </plugin>
         </plugins>
     </build>
+
     <dependencies>
-        <dependency>
-            <groupId>edu.cmu</groupId>
-            <artifactId>tetrad-lib</artifactId>
-            <version>6.0.1-SNAPSHOT</version>
-        </dependency>
         <dependency>
             <groupId>commons-cli</groupId>
             <artifactId>commons-cli</artifactId>
             <version>1.3.1</version>
         </dependency>
+        <dependency>
+            <groupId>edu.pitt.dbmi</groupId>
+            <artifactId>data-reader</artifactId>
+            <version>0.1.3</version>
+        </dependency>
+        <dependency>
+            <groupId>edu.cmu</groupId>
+            <artifactId>tetrad-lib</artifactId>
+            <version>6.0.1-SNAPSHOT</version>
+        </dependency>
         <dependency>
             <groupId>junit</groupId>
             <artifactId>junit</artifactId>
             <version>4.12</version>
             <scope>test</scope>
         </dependency>
-        <dependency>
-            <groupId>com.google.code.gson</groupId>
-            <artifactId>gson</artifactId>
-            <version>2.6.2</version>
-            <scope>compile</scope>
-        </dependency>
     </dependencies>
 </project>