Merge pull request #159 from bcgsc/Bugfix/KBDEV-1152-Add-displayName-…

…to-chromosome-json-file Bugfix/KBDEV-1152 Add displayName to chromosome json file
bcgsc · Jul 22, 2024 · 0562456 · 0562456
2 parents 786b9d3 + 255006f
commit 0562456
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Showing 2 changed files with 7 additions and 4 deletions.
diff --git a/data/chromosomes.json b/data/chromosomes.json
@@ -91,15 +91,18 @@
         },
         "MT": {
             "biotype": "chromosome",
-            "name": "chrMT"
+            "name": "chrMT",
+            "displayName":"mt"
         },
         "X": {
             "biotype": "chromosome",
-            "name": "chrX"
+            "name": "chrX",
+            "displayName":"x"
         },
         "Y": {
             "biotype": "chromosome",
-            "name": "chrY"
+            "name": "chrY",
+            "displayName":"y"
         }
     },
     "sources": {

diff --git a/src/ontology/README.md b/src/ontology/README.md
@@ -80,5 +80,5 @@ the ontology term
 Once this file has been built it can be loaded as follows. The script will create records if they do not already exist. Any conflicts will be reported in the logging
 
 ```bash
-node bin/ontology.js --filename /path/to/json/file
+node bin/load.js file ontology </path/to/json/file>
 ```