boston_black

• Fix bugs in RNAseq
• Add function to set up library

fall_boston

• re-structure templates
• Add text with best practices
• Reproducibility:
  • test data for RNAseq, singlecell, CHIPseq
• Base project:
  • Guidelines to create repo easily
  • Example Rmd with headers and aesthetics
• RNASEQ
  • Use provenance for FA in DE report
  • Support multiple comparisons
• New templates:
  • methylation - draft
  • singcell cell QC and Inegration - stable
  • scQC shiny app - stable
  • chipseq QC and Diffbind - beta
  • COSMX - draft