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bcbio · Apr 23, 2024 · 299e999 · 299e999
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commit 299e999
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/inst/rmarkdown/templates/rnaseq/skeleton/params_de.R b/inst/rmarkdown/templates/rnaseq/skeleton/params_de.R
@@ -10,6 +10,6 @@ root = "../.."
 date = "YYYYMMDD"
 column = "sample_type"
 subset_column = NA
-metadata_fn = "/n/data1/cores/bcbio/platform/bcbioR-test-data/rnaseq/bcbio/coldata.csv"
-counts_fn = '/n/data1/cores/bcbio/platform/bcbioR-test-data/rnaseq/bcbio/tximport-counts.csv'
+metadata_fn = "https://raw.githubusercontent.com/bcbio/bcbioR-test-data/main/rnaseq/bcbio/coldata.csv"
+counts_fn = 'https://raw.githubusercontent.com/bcbio/bcbioR-test-data/main/rnaseq/bcbio/tximport-counts.csv'
 basedir <- 'results'
diff --git a/inst/rmarkdown/templates/rnaseq/skeleton/params_qc.R b/inst/rmarkdown/templates/rnaseq/skeleton/params_qc.R
@@ -6,5 +6,5 @@ aim = 'short description'
 analyst = 'person in the core'
 
 
-metadata_fn="/n/data1/cores/bcbio/platform/bcbioR-test-data/rnaseq/bcbio/coldata.csv"
-se_object="/n/data1/cores/bcbio/platform/bcbioR-test-data/rnaseq/bcbio/bcbio-se.rds"
+metadata_fn='https://raw.githubusercontent.com/bcbio/bcbioR-test-data/main/rnaseq/bcbio/coldata.csv'
+se_object=url("https://raw.githubusercontent.com/bcbio/bcbioR-test-data/main/rnaseq/bcbio/bcbio-se.rds")