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refactor: compute transitive embeds during indexing (#1868)
**What type of PR is this?** refactor **What package or component does this PR mostly affect?** all **What does this PR do? Why is it needed?** Refactor working toward serializing+caching of the rule index. The `ruleRecord` should be as close as possible to what a language returns. All computed data such as that for indexing should be computed from the `ruleRecord` and persisted elsewhere. **Which issues(s) does this PR fix?** Ref: #1181 Some ideas are similar to #1182 while trying to reduce the scope of the change and diff. **Other notes for review** IMO this is a reasonable cleanup on its own, without even taking serializing+caching into account 🤷
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