Merge remote-tracking branch 'github/25-allow-to-trigger-pipelines-ma… #164

Workflow file for this run

.github/workflows/linting.yml at 8ce35fb

	name: Code-Analysis

	on:
	push:
	workflow_dispatch:
	schedule:
	- cron: '0 5 * * 1' # Every Monday at 5:00 AM UTC (7:00 AM CEST)

	jobs:
	pylint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install $(find . -name "requirement*" -type f -printf ' -r %p')
	pip install pylint
	- name: Analysing the code with pylint
	run: \|
	pylint -d C0301,R0913,W1202 $(git ls-files '*.py') --ignored-modules "rdkit"
	mypy:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install "numpy<2.0.0"
	pip install mypy
	mypy . \|\| exit_code=$?
	mypy --install-types --non-interactive
	- name: Analysing the code with mypy
	run: \|
	mypy --ignore-missing-imports --disallow-any-generics --disallow-untyped-defs --no-implicit-optional --disallow-incomplete-defs .
	pydocstyle:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install pydocstyle
	- name: Analysing the code with pydocstyle
	run: \|
	pydocstyle .

	docsig:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install docsig
	- name: Analysing the code with docsig
	run: \|
	docsig --check-class-constructor --check-dunders --check-protected-class-methods --check-nested --check-overridden --check-protected .

	black:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install black[jupyter]
	- name: Analysing the code with black
	run: \|
	black --check .

	flake8:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8
	- name: Analysing the code with flake8
	run: \|
	flake8 --extend-ignore=D203,E203,E501,W503 .

	interrogate:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install interrogate
	- name: Analysing the code with interrogate
	run: \|
	interrogate --ignore-overloaded-functions -vv .

	bandit:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install bandit
	- name: Analysing the code with bandit
	run: \|
	bandit -r --skip=B404,B603,B602 .

	isort:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install isort
	- name: Analysing the code with isort
	run: \|
	isort --profile black .

	test_basis:
	needs:
	- pylint
	- mypy
	- pydocstyle
	- docsig
	- black
	- flake8
	- interrogate
	- bandit
	- isort
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12"]
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install package
	run: \|
	python -m pip install --upgrade pip
	pip install .
	- name: Run unit-tests
	run: \|
	python -m unittest discover -v -s tests -t .

	test_chemprop:
	needs:
	- test_basis
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.11
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install package
	run: \|
	python -m pip install --upgrade pip
	pip install torch
	pip install .[chemprop]
	- name: Run unit-tests for chemprop
	run: \|
	python -m unittest discover -v -s test_extras/test_chemprop -t .

	test_notebooks:
	needs:
	- test_basis
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.11
	uses: actions/setup-python@v3
	with:
	python-version: "3.11"
	- name: Install package
	run: \|
	python -m pip install --upgrade pip
	pip install "pandas<2.2.0"
	pip install .[notebooks]
	- name: Run unit-tests for notebooks
	run: \|
	python test_extras/test_notebooks/test_notebooks.py --continue-on-failure

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Merge remote-tracking branch 'github/25-allow-to-trigger-pipelines-ma… #164

Workflow file

Merge remote-tracking branch 'github/25-allow-to-trigger-pipelines-ma… #164

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Workflow file for this run