PopPUNK v2.6.0

Main changes:

• Lineage fits now use reciprocal best match with --reciprocal-only, --count-unique-distances and --max-search-depth, which gives better results.
• Fixes for threshold model assignment

What's Changed

• Update parsing fixes branch with new master by @nickjcroucher in #195
• Update with recent changes to master by @nickjcroucher in #205
• Integrate changes from V250 candidate by @nickjcroucher in #206
• Small fixes for beebop by @muppi1993 in #217
• Update poppunk_iterate.py by @BZhao95 in #216
• Read the docs sphinx version by @johnlees in #215
• Adds poppunk_distribute_fit.py by @samhorsfield96 in #226
• Update with changes to master by @nickjcroucher in #230
• Patch for relative paths in plot fit by @johnlees in #236
• Fix option names for k-mer range min/max and k-mer step. by @tmaklin in #239
• Fix for assign with threshold models by @johnlees in #240
• Lineage model fitting - PopPUNK changes by @nickjcroucher in #232
• Remove blas by @johnlees in #244
• Proceed with update-db on QC failure by @johnlees in #245

New Contributors

• @BZhao95 made their first contribution in #216
• @samhorsfield96 made their first contribution in #226
• @tmaklin made their first contribution in #239

Full Changelog: v2.5.0...v2.6.0