Label order #152
Merged
Label order #152
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* Skip tree build if fewer than 3 samples * Move web code into module * Try to set secret key * Move azure CI to github actions * Update environment.yml * Add docker action * Fix yaml syntax * More actions changes * Add OS to docker action; custom python * Attempt to activate conda environment * Remove secret from docker * Missing space in tests * Move web code to correct function * Use docker version of actions * Fix docker yaml * Point to correct dockerfile * Newline in azure-pipelines * Trigger CI on PR targeting master * Correct name of azure pipelines * Update dockerfile to actually get code * Try to use default gunicorn port * Another attempt to change the port * Add host IP to gunicorn launch * Bind loopback; add test * Add ssh to container * Run ssh service; try to optimise gunicorn command * Fix apt line * Remove log line from gunicorn launch * Fix syntax error in Dockerfile * Add gunicorn logging line * Remove gunicorn optimisations * Remove ssh access * Revert to 207529a * Bind loopback (again) * Revert to 341ebd4 * Revert to 341ebd4 * Move data locations in web app * Use flask apscheduler * make scheduler global * Add script to get DB info * Increase size of dev shm * Remove use of /dev/shm * Fix db variable name * Install extension * Update include file location for network route * Update include file location to check for no of isolates * remove web arg from visualise * Move copy to entrypoint; fix path errors in visualise * Set default for env variable in web * Fix visualise tests * Update visualise command in network route * Update previous clustering argument * Fix path basename in cluster write * Fix output location for network route * Update visualise args * Automated API tests * Remove path insertion * Force gt v2.35 * Merge api routes and set model_dir to reference * Remove path insert from web test * Workaround for web query graph * Fix web test * Add assets needed to run web version * Attempt to add ACR action * Fix docker build cmd * Add path to Dockerfile * Change tag in ACR * Add check that visualise has enough sequences * Fix bracket Co-authored-by: Danderson123 <[email protected]> Co-authored-by: Daniel Anderson <[email protected]>
Label order remains unchanged (unlike with mash)
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Update branch with taxon reordering code