Add full network variable to lineage assignment call

bacpop · Oct 11, 2024 · eb2249d · eb2249d
1 parent 5a14b8d
commit eb2249d
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/PopPUNK/lineages.py b/PopPUNK/lineages.py
@@ -392,7 +392,9 @@ def query_db(args):
                     accessory,
                     args.gpu_dist,
                     args.gpu_graph,
-                    save_partial_query_graph = False)
+                    save_partial_query_graph = False,
+                    True # Use full network - does not make sense to use references for lineages
+                    )
 
     # Process clustering
     query_strains = {}