Add new scores to tests

bacpop · Jan 31, 2021 · 1b1d30a · 1b1d30a
1 parent c82a03d
commit 1b1d30a
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/test/run_test.py b/test/run_test.py
@@ -31,6 +31,8 @@
 sys.stderr.write("Running model refinement (--fit-model refine)\n")
 subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite", shell=True, check=True)
 subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --indiv-refine both", shell=True, check=True)
+subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --score-idx 1", shell=True, check=True)
+subprocess.run("python ../poppunk-runner.py --fit-model refine --ref-db example_db --output example_refine --neg-shift 0.8 --overwrite --score-idx 2", shell=True, check=True)
 subprocess.run("python ../poppunk-runner.py --fit-model threshold --threshold 0.003 --ref-db example_db --output example_threshold", shell=True, check=True)
 
 # lineage clustering