pyproject.toml

[tool.poetry]
name = "echidna-sc"
version = "1.0.0"
description = "Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation."
packages = [{include = "echidna", from="."}]
authors = [
    "Joy Linyue Fan <lf2684@columbia.edu>",
    "Mingxuan Zhang <mz2934@cumc.columbia.edu>",
    "William O'Brien <wob@cs.ucla.edu>",
    "Joshua Myers <jm5707@columbia.edu>",
]
license = "MIT"
readme = "README.md"
homepage = "https://github.com/azizilab/echidna"
repository = "https://github.com/azizilab/echidna"
keywords = ["scRNA", "wgs", "cnv"]
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]

[tool.poetry.dependencies]
python = "^3.10"
scanpy = ">=1.10"
numpy = ">=1.21"
pandas = "*"
seaborn = "*"
hmmlearn = "*"
pyro-ppl = ">=1.9.1"
graphviz = "*"
requests = "*"
scikit-learn = "*"
leidenalg = "*"

[build-system]
requires = ["poetry>=1.1.0"]
build-backend = "poetry.core.masonry.api"