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@azizilab

azizilab

Computational Cancer Biology Lab at Columbia University

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  1. starfysh starfysh Public

    Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

    Jupyter Notebook 106 13

  2. decipher decipher Public

    A single-cell analysis toolkit to jointly analyze samples from distinct conditions

    Python 23

  3. sdcd sdcd Public

    Stable Differentiable Causal Discovery (SDCD)

    Jupyter Notebook 18 2

  4. DIISCO_public DIISCO_public Public

    Publically accessible code for DIISCO method

    Jupyter Notebook 9 1

  5. starfysh_reproducibility starfysh_reproducibility Public

    Jupyter Notebook 6 2

  6. decipher_reproducibility decipher_reproducibility Public

    Jupyter Notebook 3 2

Repositories

Showing 10 of 13 repositories
  • echidna Public

    Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation

    azizilab/echidna’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 18, 2024
  • echidna_reproducibility Public
    azizilab/echidna_reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 15, 2024
  • starfysh_reproducibility Public
    azizilab/starfysh_reproducibility’s past year of commit activity
    Jupyter Notebook 6 2 0 0 Updated Nov 26, 2024
  • dli_reproducibility Public

    Notebooks to recreate paper figures

    azizilab/dli_reproducibility’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Nov 8, 2024
  • decipher_reproducibility Public
    azizilab/decipher_reproducibility’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Nov 5, 2024
  • DIISCO_public Public

    Publically accessible code for DIISCO method

    azizilab/DIISCO_public’s past year of commit activity
    Jupyter Notebook 9 MIT 1 4 1 Updated Oct 29, 2024
  • decipher Public

    A single-cell analysis toolkit to jointly analyze samples from distinct conditions

    azizilab/decipher’s past year of commit activity
    Python 23 0 1 0 Updated Sep 9, 2024
  • starfysh Public

    Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

    azizilab/starfysh’s past year of commit activity
    Jupyter Notebook 106 BSD-3-Clause 13 3 0 Updated Aug 21, 2024
  • sdcd Public

    Stable Differentiable Causal Discovery (SDCD)

    azizilab/sdcd’s past year of commit activity
    Jupyter Notebook 18 MIT 2 0 0 Updated Jun 17, 2024
  • decipher_data Public

    Data (small) for decipher tutorials.

    azizilab/decipher_data’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 15, 2023
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