Merge pull request #67 from Fusion86/master

SIFT Align: keep stack slice labels intact
axtimwalde · Feb 22, 2024 · 3c2fb01 · 3c2fb01
2 parents 7879691 + 992de2b
commit 3c2fb01
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/mpicbg_/src/main/java/SIFT_Align.java b/mpicbg_/src/main/java/SIFT_Align.java
@@ -195,7 +195,7 @@ final public void run( final String args )
 					Math.round( vis_scale * stack.getHeight() ) );
 
 		final ImageProcessor firstSlice = stack.getProcessor( 1 );
-		stackAligned.addSlice( null, firstSlice.duplicate() );
+		stackAligned.addSlice( stack.getSliceLabel(1), firstSlice.duplicate() );
 		stackAligned.getProcessor( 1 ).setMinAndMax( firstSlice.getMin(), firstSlice.getMax() );
 		final ImagePlus impAligned = new ImagePlus( "Aligned 1 of " + stack.getSize(), stackAligned );
 		impAligned.show();
@@ -364,16 +364,17 @@ final public void run( final String args )
 			else
 				mapping.map( originalSlice, alignedSlice );
 
-			stackAligned.addSlice( null, alignedSlice );
+			String sliceLabel = stack.getSliceLabel( i + 1 );
+			stackAligned.addSlice( sliceLabel, alignedSlice );
 			if ( p.showInfo )
 			{
 				ImageProcessor tmp;
 				tmp = ip3.createProcessor( stackInfo.getWidth(), stackInfo.getHeight() );
 				tmp.insert( ip3, 0, 0 );
-				stackInfo.addSlice( null, tmp ); // fixing silly 1 pixel size missmatches
+				stackInfo.addSlice( sliceLabel, tmp ); // fixing silly 1 pixel size missmatches
 				tmp = ip4.createProcessor( stackInfo.getWidth(), stackInfo.getHeight() );
 				tmp.insert( ip4, 0, 0 );
-				stackInfo.addSlice( null, tmp );
+				stackInfo.addSlice( sliceLabel, tmp );
 				if ( i == 1 )
 				{
 					impInfo = new ImagePlus( "Alignment info", stackInfo );