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Update/nextflow container #61

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merged 14 commits into from
Sep 13, 2019

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wleepang
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Description of changes:

  • Two stage deployment
  • refactor nextflow assets
    • update container entrypoint script
      • add logging of environment
      • handle s3 uris as projects
      • sync session cache for resume
      • use logdir and workdir as defined in environment variables
    • update job definition to match container entrypoint script
      • create logdir and workdir environment variables
    • update s3 paths to create / use logdir and workdir
    • update docs

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wleepang added 14 commits July 11, 2019 09:09
resolve #57
* update container entrypoint script
  * handle s3 uris as projects
  * sync session cache for resume
  * use logdir and workdir as defined in environment variables
* update job definition to match container entrypoint script
  * create logdir and workdir environment variables
* update s3 paths to create / use logdir and workdir
use the new (19.07) config syntax for specifying path to awscli
@wleepang wleepang merged commit d518f65 into aws-samples:master Sep 13, 2019
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