Skip to content
This repository has been archived by the owner on Aug 9, 2023. It is now read-only.

Fixed issue when running aws cli v2 on minimal docker instances (erro… #128

Merged
merged 3 commits into from
Feb 10, 2021
Merged

Fixed issue when running aws cli v2 on minimal docker instances (erro… #128

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
bca5397
Fixed issue when running aws cli v2 on minimal docker instances (erro…
Feb 9, 2021
35ded16
Updating nextflow entry script to include the libz.so fix (setting LD…
Feb 10, 2021
b5855c6
revert nextflow.aws.sh
wleepang Feb 10, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/containers/nextflow/nextflow.aws.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ cat ./nextflow.config

# stage in session cache
# .nextflow directory holds all session information for the current and past runs.
# it should be `sync`'d with an s3 uri, so that runs from previous sessions can be
# it should be `sync`'d with an s3 uri, so that runs from previous sessions can be
# resumed
echo "== Restoring Session Cache =="
aws s3 sync --no-progress $NF_LOGSDIR/.nextflow .nextflow
Expand Down
1 change: 1 addition & 0 deletions src/ecs-additions/fetch_and_run.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@
# See below for usage instructions.

#PATH="/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin"
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/aws-cli/v2/current/dist
wleepang marked this conversation as resolved.
Show resolved Hide resolved
BASENAME="${0##*/}"
AWS="/usr/local/aws-cli/v2/current/bin/aws"

Expand Down