Update schema patching and fix some issues

[kddejong]

Issue #, if available:

Description of changes:

• Update schema patching and fix some issues

By submitting this pull request, I confirm that you can use, modify, copy, and redistribute this contribution, under the terms of your choice.

[codecov]

Codecov Report

Attention: Patch coverage is 33.33333% with 4 lines in your changes missing coverage. Please review.

Project coverage is 93.52%. Comparing base (39ca987) to head (015b67c).

Files	Patch %	Lines
src/cfnlint/schema/manager.py	33.33%	4 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3570      +/-   ##
==========================================
- Coverage   93.56%   93.52%   -0.04%     
==========================================
  Files         349      349              
  Lines       11761    11766       +5     
  Branches     2496     2498       +2     
==========================================
  Hits        11004    11004              
- Misses        423      427       +4     
- Partials      334      335       +1     

Flag	Coverage Δ
unittests	?

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.