modified: docs/datasets.html

modified: docs/dsm_api.html modified: docs/dsm_torch.html modified: docs/index.html modified: docs/losses.html modified: docs/utilities.html
autonlab · Feb 5, 2021 · a2b0d8e · a2b0d8e
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diff --git a/docs/datasets.html b/docs/datasets.html
@@ -30,6 +30,7 @@ <h1 class="title">Module <code>dsm.datasets</code></h1>
 <section id="section-intro">
 <p>Utility functions to load standard datasets to train and evaluate the
 Deep Survival Machines models.</p>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 </section>
@@ -43,6 +44,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.datasets.load_dataset"><code class="name flex">
 <span>def <span class="ident">load_dataset</span></span>(<span>dataset='SUPPORT', **kwargs)</span>
@@ -84,13 +86,15 @@ <h2 id="returns">Returns</h2>
 <dd>A tuple of the form of (x, t, e) where x, t, e are the input covariates,
 event times and the censoring indicators respectively.</dd>
 </dl></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </section>
 <section>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul></ul>

diff --git a/docs/dsm_api.html b/docs/dsm_api.html
@@ -30,6 +30,7 @@ <h1 class="title">Module <code>dsm.dsm_api</code></h1>
 <section id="section-intro">
 <p>This module is a wrapper around torch implementations and
 provides a convenient API to train Deep Survival Machines.</p>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 </section>
@@ -80,6 +81,7 @@ <h2 id="example">Example</h2>
 &gt;&gt;&gt; model = DeepSurvivalMachines()
 &gt;&gt;&gt; model.fit(x, t, e)
 </code></pre></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_api.DeepSurvivalMachines.fit"><code class="name flex">
@@ -223,6 +225,7 @@ <h2 id="returns">Returns</h2>
 <dd>
 <div class="desc"><p>The Deep Recurrent Survival Machines model to handle data with
 time-dependent covariates.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_api.DeepRecurrentSurvivalMachines.fit"><code class="name flex">
@@ -366,6 +369,7 @@ <h2 id="returns">Returns</h2>
 <dd>
 <div class="desc"><p>The Deep Convolutional Survival Machines model to handle data with
 image-based covariates.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_api.DeepConvolutionalSurvivalMachines.fit"><code class="name flex">
@@ -509,6 +513,7 @@ <h2 id="returns">Returns</h2>
 <dd>
 <div class="desc"><p>The Deep CNN-RNN Survival Machines model to handle data with
 moving image streams.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_api.DeepCNNRNNSurvivalMachines.fit"><code class="name flex">
@@ -649,6 +654,7 @@ <h2 id="returns">Returns</h2>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul></ul>

diff --git a/docs/dsm_torch.html b/docs/dsm_torch.html
@@ -32,6 +32,7 @@ <h1 class="title">Module <code>dsm.dsm_torch</code></h1>
 The main interface is the DeepSurvivalMachines class which inherits
 from torch.nn.Module.</p>
 <p>Note: NOT DESIGNED TO BE CALLED DIRECTLY!!!</p>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 </section>
@@ -64,6 +65,7 @@ <h2 id="parameters">Parameters</h2>
 </dl>
 <h2 id="returns">Returns</h2>
 <p>an MLP with torch.nn.Module with the specfied structure.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.dsm_torch.create_conv_representation"><code class="name flex">
 <span>def <span class="ident">create_conv_representation</span></span>(<span>inputdim, hidden, typ='ConvNet', add_linear=True)</span>
@@ -89,6 +91,7 @@ <h2 id="parameters">Parameters</h2>
 </dl>
 <h2 id="returns">Returns</h2>
 <p>an ConvNet with torch.nn.Module with the specfied structure.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </section>
@@ -141,6 +144,7 @@ <h2 id="parameters">Parameters</h2>
 Default is 1.</dd>
 </dl>
 <p>Initializes internal Module state, shared by both nn.Module and ScriptModule.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_torch.DeepSurvivalMachinesTorch.forward"><code class="name flex">
@@ -151,12 +155,14 @@ <h3>Methods</h3>
 <h2 id="args">Args</h2>
 <p>x:
 a torch.tensor of the input features.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.dsm_torch.DeepSurvivalMachinesTorch.get_shape_scale"><code class="name flex">
 <span>def <span class="ident">get_shape_scale</span></span>(<span>self, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </dd>
@@ -203,6 +209,7 @@ <h2 id="parameters">Parameters</h2>
 Default is 1.</dd>
 </dl>
 <p>Initializes internal Module state, shared by both nn.Module and ScriptModule.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Methods</h3>
 <dl>
 <dt id="dsm.dsm_torch.DeepRecurrentSurvivalMachinesTorch.forward"><code class="name flex">
@@ -216,12 +223,14 @@ <h3>Methods</h3>
 <h2 id="args">Args</h2>
 <p>x:
 a torch.tensor of the input features.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.dsm_torch.DeepRecurrentSurvivalMachinesTorch.get_shape_scale"><code class="name flex">
 <span>def <span class="ident">get_shape_scale</span></span>(<span>self, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </dd>
@@ -267,6 +276,7 @@ <h2 id="parameters">Parameters</h2>
 Default is 1.</dd>
 </dl>
 <p>Initializes internal Module state, shared by both nn.Module and ScriptModule.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Class variables</h3>
 <dl>
 <dt id="dsm.dsm_torch.DeepConvolutionalSurvivalMachinesTorch.dump_patches"><code class="name">var <span class="ident">dump_patches</span> : bool</code></dt>
@@ -292,12 +302,14 @@ <h3>Methods</h3>
 <h2 id="args">Args</h2>
 <p>x:
 a torch.tensor of the input features.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.dsm_torch.DeepConvolutionalSurvivalMachinesTorch.get_shape_scale"><code class="name flex">
 <span>def <span class="ident">get_shape_scale</span></span>(<span>self, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </dd>
@@ -344,6 +356,7 @@ <h2 id="parameters">Parameters</h2>
 Default is 1.</dd>
 </dl>
 <p>Initializes internal Module state, shared by both nn.Module and ScriptModule.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 <h3>Class variables</h3>
 <dl>
 <dt id="dsm.dsm_torch.DeepCNNRNNSurvivalMachinesTorch.dump_patches"><code class="name">var <span class="ident">dump_patches</span> : bool</code></dt>
@@ -368,19 +381,22 @@ <h3>Methods</h3>
 <h2 id="args">Args</h2>
 <p>x:
 a torch.tensor of the input features.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.dsm_torch.DeepCNNRNNSurvivalMachinesTorch.get_shape_scale"><code class="name flex">
 <span>def <span class="ident">get_shape_scale</span></span>(<span>self, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </dd>
 </dl>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul></ul>

diff --git a/docs/index.html b/docs/index.html
@@ -144,6 +144,7 @@ <h2 id="license">License</h2>
 user/themes/auton/images/AutonLogo.png"></p>
 <p><br><br><br><br><br>
 <br><br><br><br><br></p>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 <h2 class="section-title" id="header-submodules">Sub-modules</h2>
@@ -195,6 +196,7 @@ <h2 class="section-title" id="header-submodules">Sub-modules</h2>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul>

diff --git a/docs/losses.html b/docs/losses.html
@@ -39,6 +39,7 @@ <h1 class="title">Module <code>dsm.losses</code></h1>
 <p class="admonition-title">Warning</p>
 <p>NOT DESIGNED TO BE CALLED DIRECTLY!!!</p>
 </div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 </section>
@@ -52,31 +53,36 @@ <h2 class="section-title" id="header-functions">Functions</h2>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.losses.conditional_loss"><code class="name flex">
 <span>def <span class="ident">conditional_loss</span></span>(<span>model, x, t, e, elbo=True, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.losses.predict_mean"><code class="name flex">
 <span>def <span class="ident">predict_mean</span></span>(<span>model, x, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.losses.predict_cdf"><code class="name flex">
 <span>def <span class="ident">predict_cdf</span></span>(<span>model, x, t_horizon, risk='1')</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </section>
 <section>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul></ul>

diff --git a/docs/utilities.html b/docs/utilities.html
@@ -28,6 +28,7 @@ <h1 class="title">Module <code>dsm.utilities</code></h1>
 </header>
 <section id="section-intro">
 <p>Utility functions to train the Deep Survival Machines models</p>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </section>
 <section>
 </section>
@@ -41,25 +42,29 @@ <h2 class="section-title" id="header-functions">Functions</h2>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.utilities.pretrain_dsm"><code class="name flex">
 <span>def <span class="ident">pretrain_dsm</span></span>(<span>model, t_train, e_train, t_valid, e_valid, n_iter=10000, lr=0.01, thres=0.0001)</span>
 </code></dt>
 <dd>
 <div class="desc"></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 <dt id="dsm.utilities.train_dsm"><code class="name flex">
 <span>def <span class="ident">train_dsm</span></span>(<span>model, x_train, t_train, e_train, x_valid, t_valid, e_valid, n_iter=10000, lr=0.001, elbo=True, bs=100)</span>
 </code></dt>
 <dd>
 <div class="desc"><p>Function to train the torch instance of the model.</p></div>
+<div class="git-link-div"><a href="https://github.com/autonlab/DeepSurvivalMachines" class="git-link">Browse git</a></div>
 </dd>
 </dl>
 </section>
 <section>
 </section>
 </article>
 <nav id="sidebar">
+<img src="https://ndownloader.figshare.com/files/26367844">
 <h1>Index</h1>
 <div class="toc">
 <ul></ul>