Merge pull request #1068 from automl/development

Development

.binder/apt.txt

@@ -0,0 +1,2 @@
+build-essential
+swig

.binder/postBuild

@@ -0,0 +1,43 @@
+#!/bin/bash
+
+set -e
+
+python -m pip install .[docs,examples]
+
+# Taken from https://github.com/scikit-learn/scikit-learn/blob/22cd233e1932457947e9994285dc7fd4e93881e4/.binder/postBuild
+# under BSD3 license, copyright the scikit-learn contributors
+
+# This script is called in a binder context. When this script is called, we are
+# inside a git checkout of the automl/auto-sklearn repo. This script
+# generates notebooks from the auto-sklearn python examples.
+
+if [[ ! -f /.dockerenv ]]; then
+    echo "This script was written for repo2docker and is supposed to run inside a docker container."
+    echo "Exiting because this script can delete data if run outside of a docker container."
+    exit 1
+fi
+
+# Copy content we need from the auto-sklearn repo
+TMP_CONTENT_DIR=/tmp/auto-sklearn
+mkdir -p $TMP_CONTENT_DIR
+cp -r examples .binder $TMP_CONTENT_DIR
+# delete everything in current directory including dot files and dot folders
+find . -delete
+
+# Generate notebooks and remove other files from examples folder
+GENERATED_NOTEBOOKS_DIR=examples
+cp -r $TMP_CONTENT_DIR/examples $GENERATED_NOTEBOOKS_DIR
+
+find $GENERATED_NOTEBOOKS_DIR -name 'example_*.py' -exec sphx_glr_python_to_jupyter.py '{}' +
+# Keep __init__.py and custom_metrics.py
+NON_NOTEBOOKS=$(find $GENERATED_NOTEBOOKS_DIR -type f | grep -v '\.ipynb' | grep -v 'init' | grep -v 'custom_metrics')
+rm -f $NON_NOTEBOOKS
+
+# Modify path to be consistent by the path given by sphinx-gallery
+mkdir notebooks
+mv $GENERATED_NOTEBOOKS_DIR notebooks/
+
+# Put the .binder folder back (may be useful for debugging purposes)
+mv $TMP_CONTENT_DIR/.binder .
+# Final clean up
+rm -rf $TMP_CONTENT_DIR

.binder/requirements.txt

@@ -0,0 +1 @@
+-r ../requirements.txt

.gitignore

@@ -75,3 +75,6 @@ coverage.xml
 *,cover
 .hypothesis/
 prof/
+
+# Mypy
+.mypy_cache/

.pre-commit-config.yaml

@@ -3,23 +3,27 @@ repos:
     rev: v0.761
     hooks:
       - id: mypy
+        args: [--show-error-codes]
         name: mypy auto-sklearn-ensembles
         files: autosklearn/ensembles
       - id: mypy
+        args: [--show-error-codes]
         name: mypy auto-sklearn-metrics
         files: autosklearn/metrics
       - id: mypy
+        args: [--show-error-codes]
         name: mypy auto-sklearn-data
         files: autosklearn/data
       - id: mypy
+        args: [--show-error-codes]
         name: mypy auto-sklearn-util
         files: autosklearn/util
   - repo: https://gitlab.com/pycqa/flake8
     rev: 3.8.3
     hooks:
       - id: flake8
         name: flake8 auto-sklearn
-        files: autosklearn/*
+        files: autosklearn/.*
       - id: flake8
         name: flake8 file-order-data
         files: autosklearn/data
@@ -42,4 +46,4 @@ repos:
           - flake8-import-order
       - id: flake8
         name: flake8 autosklearn-test
-        files: test/*
+        files: test/.*

autosklearn/__version__.py

@@ -1,4 +1,4 @@
 """Version information."""
 
 # The following line *must* be the last in the module, exactly as formatted:
-__version__ = "0.12.1"
+__version__ = "0.12.2"