Update flask

Dockerfile

@@ -1,4 +1,4 @@
-FROM alpine:3.13
+FROM alpine:3.19
 
 MAINTAINER "Xavier Garnier <[email protected]>"
 
@@ -10,7 +10,7 @@ RUN apk add --no-cache --update \
     gcc g++ libstdc++ make \
     zlib-dev libzip-dev bzip2-dev xz-dev \
     cython python3 python3-dev \
-    build-base openldap-dev python2-dev \
+    build-base openldap-dev \
     py3-numpy \
     nodejs-current npm \
     git bash && \
@@ -22,5 +22,5 @@ RUN apk add --no-cache --update \
     mv /Pipfile /askomics/Pipfile && \
     mv /Pipfile.lock /askomics/Pipfile.lock && \
     pip install -r requirements.txt && \
-    pipenv install && \
+    pipenv install
     rm /askomics/requirements.txt /askomics/Pipfile /askomics/Pipfile.lock

Pipfile

@@ -4,8 +4,8 @@ verify_ssl = true
 name = "pypi"
 
 [packages]
-werkzeug = "==0.16.1"
-flask = "<2"
+werkzeug = "*"
+flask = "<3"
 flask-reverse-proxy-fix = "*"
 validate-email = "*"
 gunicorn = "*"
@@ -17,8 +17,8 @@ celery = "*"
 redis = "*"
 watchdog = "*"
 gitpython = "*"
-biopython = "*"
-bcbio-gff = "*"
+biopython = "==1.81"
+bcbio-gff = "==0.7.0"
 bioblend = "*"
 pysam = "*"
 pybedtools = "*"
@@ -29,6 +29,7 @@ tld = "*"
 argh = "*"
 python-ldap = "*"
 python-dateutil = "*"
+markupsafe = "*"
 
 [dev-packages]
 pytest = "*"