Developed a Named Entity Recognition (NER) algorithm pipeline for medical notes question/answering. Project performed under my supervision by Pushkaraj Palnitkar during the course of his internship at Endeavor Health Advanced Analytics Team.
EEH was merged with NorthShore University HealthSystem (NorthShore) in 2022 and created Endeavor Health.
Named entity recognition on clinical notes
Copy https project url from github green code button.
Open terminal:
$git clone <url>
$git lfs pull
$pip install virtualenv
$cd <project folder>
$virtualenv env
$source env/bin/activate (For windows: .\env\Scripts\activate)
$pip install -r requirements.txt
$python src/predict.py
Enter your clinical note in terminal: Example clinical from MeDAL dataset
Out will be displayed:
