Code

Reorganoze tools module#625

Code

Merged

Xiaojieqiu merged 14 commits intoaristoteleo:masteraristoteleo/dynamo-release:masterfrom Sichao25:toolSichao25/dynamo-release:toolCopy head branch name to clipboardDec 11, 2023

+4,283-4,145

Commits

Commits on Nov 16, 2023

• deprecate dynamo_bk and dynamo_fitting

  Sichao25

  committed
  518f9da

• deprecate _dynamics_deprecated utils_moments_deprecated

  Sichao25

  committed
  a55ef45

• reorganize utils_markers

  Sichao25

  committed
  f721021

Commits on Nov 17, 2023

• deprecated DDRTree based legacy functions

  Sichao25

  committed
  6a49474

• reorganize DDRtree based functions and psl

  Sichao25

  committed
  4fea098

• fix format issue and add file docstrings

  Sichao25

  committed
  6fac27e

• deprecate leagcy moments functions

  Sichao25

  committed
  9610b8e

• reorganize multiomics and deprecate infomap

  Sichao25

  committed
  a2a52a3

• rename pseudptime_graph to DDRTree_graph

  Sichao25

  committed
  5796e7f

Commits on Nov 21, 2023

• rename _gen_neighbor_keys to generate_neighbor_keys

  Sichao25

  committed
  e18d3a6

• reorganize orders in files

  Sichao25

  committed
  01741e3

• reorganize the order in more files

  Sichao25

  committed
  220bbcb

• change the location of func gradient

  Sichao25

  committed
  6f38e7a

Commits on Nov 30, 2023

• update the import in tests

  Sichao25

  committed
  960dff7