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Create chunk option for normalization and gene selection #598

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merged 14 commits into from
Feb 20, 2024

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Sichao25
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  • Create a chunk option for normalization
  • Create a chunk option for gene selection

PS: Part of the code needs to specift the precision (float64, float32, int). We need to consider a tradeoff between time and memory.

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codecov-commenter commented Oct 31, 2023

Codecov Report

Merging #598 (d2fed88) into master (1e8ffe4) will increase coverage by 0.08%.
The diff coverage is 51.78%.

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@@            Coverage Diff             @@
##           master     #598      +/-   ##
==========================================
+ Coverage   22.54%   22.63%   +0.08%     
==========================================
  Files         166      166              
  Lines       27362    27441      +79     
==========================================
+ Hits         6168     6210      +42     
- Misses      21194    21231      +37     
Files Coverage Δ
dynamo/preprocessing/gene_selection.py 29.88% <0.00%> (-0.27%) ⬇️
dynamo/preprocessing/normalization.py 61.29% <66.10%> (+1.55%) ⬆️
dynamo/configuration.py 78.74% <47.50%> (-4.31%) ⬇️

... and 1 file with indirect coverage changes

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@Sichao25 Sichao25 marked this pull request as ready for review October 31, 2023 20:49
@Xiaojieqiu Xiaojieqiu merged commit c12f6dd into aristoteleo:master Feb 20, 2024
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3 participants