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feat(controller): Delay pod GC deletion by a configurable amount (default 5s) #6168

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merged 4 commits into from
Jun 26, 2021

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stefansedich
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The PR #5033 was meant to fix the issue of delaying pod deletion for some period so things like logging scrapers can do their thing before the pod goes away.

Based on my comments #5033 (comment) this won't actually work as intended and another solution is needed.

My fix in this PR aims to delay the actual deletion by some configurable value and the deletion logic will then either delete immediately or queue the deletion for after this period.

@terrytangyuan tagging you as you did the original PR and tagging @alexec as you were the reviewer, as you might have more insight here. I have written an initial test here but am happy to expand coverage if desired.

One area I am not sure about is what other docs need to be updated for an API change and if that is a manual process or if there is some automation around that, it was not clear to me as I could not find any documentation explaining how to make contributions that add to the spec and this is my first time so just let me know what else I need to do.

Checklist:

Tips:

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  • Sign-off your commits to pass the DCO check: git commit --signoff.
  • Run make pre-commit -B to fix codegen or lint problems.
  • Say how how you tested your changes. If you changed the UI, attach screenshots.

@stefansedich stefansedich requested a review from jessesuen as a code owner June 17, 2021 04:27
@@ -862,6 +864,11 @@ func (podGC *PodGC) GetLabelSelector() *metav1.LabelSelector {
return nil
}

// GetDelay gets the podGC delay as a duration.
func (podGC *PodGC) GetDelay() time.Duration {
return time.Duration(podGC.DelaySeconds) * time.Second
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Will it handle the default? what will the delay be if the user didn't specify in Workflow?

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DelaySeconds should default to 0 and GetDelay in this case should return 0 seconds, meaning the deletion will be queued right away.

@stefansedich stefansedich deleted the pod-gc-delay branch June 17, 2021 23:43
@stefansedich stefansedich restored the pod-gc-delay branch June 17, 2021 23:44
@stefansedich stefansedich reopened this Jun 17, 2021
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@@ -840,6 +840,8 @@ type PodGC struct {
Strategy PodGCStrategy `json:"strategy,omitempty" protobuf:"bytes,1,opt,name=strategy,casttype=PodGCStrategy"`
// LabelSelector is the label selector to check if the pods match the labels before being added to the pod GC queue.
LabelSelector *metav1.LabelSelector `json:"labelSelector,omitempty" protobuf:"bytes,2,opt,name=labelSelector"`
// DelaySeconds is how long to delay pod GC for.
DelaySeconds uint32 `json:"delaySeconds,omitempty" protobuf:"bytes,3,opt,name=delaySeconds"`
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Can you change it to intstr.IntOrString some it can be parameterized by parameters?

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@sarabala1979 done, hopefully I got that right.

@stefansedich stefansedich force-pushed the pod-gc-delay branch 2 times, most recently from f35e65d to 27d5b14 Compare June 22, 2021 19:29
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alexec commented Jun 22, 2021

I spoke with @sarabala1979 today and we think it is likely that few users will be impacted by a short delay on Pod GC, and many who'll benefit.

I suggest we have a single global value this suitable default. No per-workflow configuration.

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I spoke with @sarabala1979 today and we think it is likely that few users will be impacted by a short delay on Pod GC, and many who'll benefit.

I suggest we have a single global value this suitable default. No per-workflow configuration.

Thanks @alexec this makes sense, will make things simpler and only require some more sleeps in the tests, did you talk about a reasonable default?

And by global default value do you mean configurable with config still?

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alexec commented Jun 22, 2021

I don't really know what a sensible default would be - maybe 10s? How long were you thinking you'd need? It should be configurable using the workflow-controller-configmap.

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I don't really know what a sensible default would be - maybe 10s? How long were you thinking you'd need? It should be configurable using the workflow-controller-configmap.

In our case I planned to configure a default of 1m or so, 10s sounds like a reasonable default however for most and this does simplify things quite a bit, let me get that done.

// Defaults to 30 seconds.
// PodGCGracePeriodSeconds specifies the duration in seconds before a terminating pod is forcefully killed.
// Value must be non-negative integer. A zero value indicates that the pod will be forcefully terminated immediately.
// Defaults to the Kubernetes default of 30 seconds.
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I changed this comment to signify what this option does, as the new option below handles the actual deletion delay.

config/config.go Outdated
@@ -144,6 +149,14 @@ func (c Config) GetResourceRateLimit() ResourceRateLimit {
}
}

func (c Config) GetPodGCDeleteDelay() time.Duration {
if c.PodGCDeleteDelay == nil {
return 30 * time.Second
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Defaulting to 30s, happy to lower but this was somewhat in the middle of the suggested 10s and the 1m we would run in our environment.

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I think this should be lower - 5s

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Lowered to 5s by default.

@@ -21,7 +21,7 @@ type PodCleanupSuite struct {
fixtures.E2ESuite
}

const enoughTimeForPodCleanup = 3 * time.Second
const enoughTimeForPodCleanup = 33 * time.Second
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Padding out tests as they will need a little more time to "wait" now as there is a default deletion delay.

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@alexec @sarabala1979 have made an initial cut at the changes moving to the config, let me know what you think.

config/config.go Outdated
// PodGCDelaySeconds specifies the duration in seconds before the pods in the GC queue get deleted.
// Value must be non-negative integer. A zero value indicates that the pods will be deleted immediately.
// Defaults to 30 seconds.
PodGCDeleteDelay *metav1.Duration `json:"podGCDeleteDelay,omitempty"`
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I used a duration here, I was torn between using seconds like the other option above or moving to the more user-friendly duration so went with the more friendly option.

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Please rename with type PodGCDeleteDelayDuration

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Ok done @sarabala1979

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I believe you'll have to fix the DCO check.

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I believe you'll have to fix the DCO check.

Fixed!

@alexec alexec changed the title feat: Add support for deletion delay when using PodGC feat(controller): Add support for deletion delay when using PodGC Jun 25, 2021
@alexec alexec changed the title feat(controller): Add support for deletion delay when using PodGC feat(controller): Delay pod GC deletion by a configurable amount (default 5s) Jun 25, 2021
@alexec alexec enabled auto-merge (squash) June 25, 2021 17:19
@alexec alexec added this to the v3.2 milestone Jun 25, 2021
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alexec commented Jun 25, 2021

I've marked this for v3.2, but we may consider back-porting to v3.1.

@alexec alexec merged commit 73a36d8 into argoproj:master Jun 26, 2021
@sarabala1979 sarabala1979 mentioned this pull request Jul 13, 2021
17 tasks
uturunku1 pushed a commit to newrelic-forks/argo-workflows that referenced this pull request Jul 22, 2021
alexec added a commit that referenced this pull request Jul 26, 2021
* Update events.md (#6119)

Trying to use the argo workflows events and I noticed that some crucial explanations are missing here. I would like to add:
- A simple WorkflowTemplate bound to the WorkflowEventBinding, to show what is triggered by the curl that send the event
- Some infos about the process that bind the event to the workflow template:
   - template creation
   - event binding apply
   - api call to trigger the workflow template creation
Plus: there is a little mistake in the selector:  metadata["x-argo"] instead of metadata["X-Argo-E2E"] I would like to correct it in order to avoid mistakes during the curl.

Hope this is appreciated! ;)

Denis

Signed-off-by: uturunku1 <[email protected]>

* docs: Add note on the requirements of resource templates. Fixes #5566 (#6125)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6127)

Signed-off-by: GitHub <[email protected]>

Co-authored-by: alexec <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* add troubleshooting notes section for running-locally docs (#6132)

Co-authored-by: uturunku1 <“[email protected]”>
Signed-off-by: uturunku1 <[email protected]>

* fix(executor): Check whether any errors within checkResourceState() are transient. Fixes #6118. (#6134)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* build: Remove PNS_PRIVILEGED=true (#6138)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Document the extraction of data from a k8s resource (#6102)

* Document the extraction of data from a k8s resource

* remove reference to lines of a file that can be outdated

Co-authored-by: Yuan Tang <[email protected]>

* Remove yaml snippet and only keep the link to the example

Co-authored-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* build image output to docker (#6128)

Co-authored-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* chore: Update stress rig and docs. Fixes #6136 (#6141)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* chore: Upgrade Alibaba OSS to use more secure ListObjectsV2() (#6142)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix: Allow setting workflow input parameters in UI. Fixes #4234 (#5319)

* fix: Allow setting workflow input parameters in UI. Fixes #4234

Signed-off-by: Kenny Trytek <[email protected]>

* fix: Allow setting workflow input parameters in UI. Fixes #4234

 - Allow workflow input parameters as well as entrypoint parameters.

Signed-off-by: Kenny Trytek <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): Performance improvement for Sprig. Fixes #6135 (#6140)

Signed-off-by: uturunku1 <[email protected]>

* update from v0.19.6 to v0.20.4 and indirect dependencies

Signed-off-by: uturunku1 <“[email protected]”>
Signed-off-by: uturunku1 <[email protected]>

* exec.GetAuthenticator takes two arguments in the k8s-client-go v0.20.4

Signed-off-by: uturunku1 <“[email protected]”>
Signed-off-by: uturunku1 <[email protected]>

* update makefile to use [email protected]

Signed-off-by: uturunku1 <“[email protected]”>
Signed-off-by: uturunku1 <[email protected]>

* docs: Fix release-notes.md

Signed-off-by: uturunku1 <[email protected]>

* docs: Update Graviti's website link (#6148)

Signed-off-by: uturunku1 <[email protected]>

* fix(ui): Fix-up local storage namespaces. Fixes #6109 (#6144)

Signed-off-by: uturunku1 <[email protected]>

* fix(executor): Capture emissary main-logs. Fixes #6145 (#6146)

Signed-off-by: uturunku1 <[email protected]>

* fix(ui): Fix event-flow scrolling. Fixes #6133 (#6147)

Signed-off-by: uturunku1 <[email protected]>

* test: Fix logging test (#6159)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(ui): Add checkbox to check all workflows in list. Fixes #6069 (#6158)

Signed-off-by: uturunku1 <[email protected]>

* docs: Use 'depends' instead of 'dependencies' in examples (#6166)

Signed-off-by: Simon Behar <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(server): Allow redirect_uri to be automatically resolved when using sso (#6167)

Signed-off-by: uturunku1 <[email protected]>

* fix(controller): Allow retry on transient errors when validating workflow spec. Fixes #6163 (#6178)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): dehydrate workflow before deleting offloaded node status (#6112)

Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6160)

Signed-off-by: GitHub <[email protected]>

Co-authored-by: alexec <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Remove RBAC for SSO from Roadmap (Already implemented) (#6174)

It looks like RBAC for SSO is already implemented by #4198 so hopefully it can be removed from the roadmap as it is also documented? https://argoproj.github.io/argo-workflows/argo-server-sso/#sso-rbac

Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6187)

Signed-off-by: GitHub <[email protected]>

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Signed-off-by: uturunku1 <[email protected]>

* docs: Fix changelog order for .0 tags (#6188)

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Signed-off-by: uturunku1 <[email protected]>

* fix(controller): Wrong validate order when validate DAG task's argument (#6190)

Signed-off-by: BOOK <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix rebase conflict

Signed-off-by: uturunku1 <[email protected]>

* run go mod tidy

Signed-off-by: uturunku1 <[email protected]>

* refactor: Remove the need for pod annotations to be mounted as a volume (#6022)

Signed-off-by: Antony Chazapis <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: ContainerSets do not have 'depends' (#6199)

Signed-off-by: Simon Behar <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix: Fix security issues related to file closing and paths (G307 & G304) (#6200)

Signed-off-by: Yuan Tang <[email protected]>
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* docs: Add links to Python examples to description annotations (#6202)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs(executor): document k8s executor behaviour with program warnings (#6212)

* docs(executor): document k8s executor behaviour with program warnings

Signed-off-by: Tianchu Zhao <[email protected]>

* docs(executor): fix typo

Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix: Fix certain sibling tasks not connected to parent (#6193)

Signed-off-by: Simon Behar <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(ui): Add copy to clipboard shortcut (#6217)

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Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6220)

Signed-off-by: GitHub <[email protected]>

Co-authored-by: alexec <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Add KarrotPay in USERS.md (#6221)

Signed-off-by: Byungjin Park <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* run go mod tidy

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* docs: Add workflow-count-resourcequota.yaml example (#6225)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix: Reduce argoexec image size (#6197)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(conttroller): Always set finishedAt dote. Fixes #6135 (#6139)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat: Add support for deletion delay when using PodGC (#6168)

Signed-off-by: Stefan Sedich <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: update bug report template (#6236)

Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6242)

Signed-off-by: GitHub <[email protected]>

Co-authored-by: alexec <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(executor): emissary - make argoexec executable from non-root containers. Fixes #6238 (#6247)

Signed-off-by: Yuan Gong <[email protected]>

Co-authored-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat: Introduce when condition to retryStrategy (#6114)

Signed-off-by: Simon Behar <[email protected]>
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* ci: Add Go code security scanner via gosec. Fixes #6203 (#6232)

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* docs: fix end of files, new lines and remove multiple lines (#6240)

Signed-off-by: NikeNano <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: add json destructuring example (#6250)


Signed-off-by: Michael Crenshaw <[email protected]>

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Signed-off-by: uturunku1 <[email protected]>

* fix(executor): Tolerate docker re-creating containers. Fixes #6244 (#6252)

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Signed-off-by: uturunku1 <[email protected]>

* fix(executor): emissary - make /var/run/argo files readable from non-root users. Fixes #6238 (#6304)

Signed-off-by: Yuan Gong <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs(controller): add missing emissary executor (#6291)

Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: docs and hacks improvements (#6310)

Signed-off-by: Michael Crenshaw <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(cli): Only list needed fields. Fixes #6000 (#6298)

* fix(cli): Only list needed fields

Signed-off-by: Alex Collins <[email protected]>

* ok

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Fix typo (#6311)

Signed-off-by: Byungjin Park <[email protected]>

Co-authored-by: Saravanan Balasubramanian <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* require sso redirect url to be an argo url (#6211)

Signed-off-by: Brandon Goode <[email protected]>

Co-authored-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: code format (#6269)

- Add yaml rendering
- Add bash rendering

Co-authored-by: Simon Behar <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(controller): Store artifact repository in workflow status. Fixes #6255 (#6299)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: document using ingress with TLS enabled (#6324)

Signed-off-by: valorl <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: document how to access hyphenated steps in expression templates (#6318)

Signed-off-by: Michael Crenshaw <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(controller): Differentiate CronWorkflow submission vs invalid spec error metrics (#6309)

* feat(controller): Differentiate CronWorkflow submission vs invalid spec error metrics

Signed-off-by: Yuan Tang <[email protected]>

* Address feedback

Signed-off-by: Yuan Tang <[email protected]>

Co-authored-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* chore: deleted wft.yaml

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* ci: only run Snyk once a day on master

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): Not updating StoredWorkflowSpec when WFT changed during workflow running (#6342)

Signed-off-by: Saravanan Balasubramanian <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(cli): v3.1 Argo Auth Token (#6344)

* fix(cli): v3.1 Argo Auth Token

Signed-off-by: Saravanan Balasubramanian <[email protected]>

* update

Signed-off-by: Saravanan Balasubramanian <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Add Alibaba Group to USERS.md (#6353)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(crd): temp fix 34s timeout bug for k8s 1.20+ (#6350)

Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: updated CHANGELOG.md (#6348)

Signed-off-by: GitHub <[email protected]>

Co-authored-by: sarabala1979 <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs(users): Add WooliesX (#6358)

Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(cli): Overridding name/generateName when creating CronWorkflows if specified (#6308)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(controller): sortDAGTasks supports sort by field Depends (#6307)

Signed-off-by: BOOK <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(fields): handle nexted fields when excluding (#6359)

Signed-off-by: AntoineDao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* feat(controller): Allow configurable host name label key when retrying different hosts (#6341)

Signed-off-by: Yuan Tang <[email protected]>
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* pull argo-events changes
update versions in go.mod and go.sum

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* run go mod tidy

Signed-off-by: uturunku1 <[email protected]>

* fix(controller): allow workflow.duration to pass validator (#6376)

Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): fix retry on transient errors when validating workflow spec (#6370)

Signed-off-by: Tianchu Zhao <[email protected]>

Co-authored-by: Saravanan Balasubramanian <[email protected]>
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* fix: examples/ci.yaml indent (#6328)

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* chore: import grafana dashboard (#6365)

Signed-off-by: GitHub <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(gcs): throw argo not found error if key not exist (#6393)

Signed-off-by: AntoineDao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* Revert "fix: examples/ci.yaml indent (#6328)"

This reverts commit 3f72fe5.

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix: Server crash when opening timeline tab for big workflows (#6369)

Signed-off-by: Alexander Matyushentsev <[email protected]>

Co-authored-by: Saravanan Balasubramanian <[email protected]>
Co-authored-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Add 4intelligence (#6400)

Signed-off-by: Thiago Gil <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Add note on additional required permission for createBucketIfNotPresent for OSS driver (#6378)

Signed-off-by: Yuan Tang <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): allow initial duration to be 0 instead of current_time-0 (#6389)


Signed-off-by: Tianchu Zhao <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* fix(controller): Mark workflows wait for semaphore as pending. Fixes #6351 (#6356)

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* docs: Updating upgrading.md. Closes #6314

Signed-off-by: Alex Collins <[email protected]>
Signed-off-by: uturunku1 <[email protected]>

* not need to convert to unstructured.unstructured

I was getting this error controller_test.go: pkg/mod/k8s.io/[email protected]/tools/cache/reflector.go:167: Failed to watch *unstructured.Unstructured: failed to list *unstructured.Unstructured: item[0]: can't assign or convert unstructured.Unstructured into v1alpha1.Workflow

Based on this comment, it seems like the conversion is not needed: kubernetes-sigs/controller-runtime#524 (comment)

Signed-off-by: uturunku1 <[email protected]>

* run make pre-commit -B

Signed-off-by: uturunku1 <[email protected]>

* fix potential file inclusion via variable lint error

there is a risk that an unintended file path will be specified. So uuse filepath.Clean() to clean up possible bad paths

Signed-off-by: uturunku1 <[email protected]>

* fix format issue

Signed-off-by: uturunku1 <[email protected]>

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@prein
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prein commented Dec 16, 2021

Is this meant to have no per-workflow configuration or no configuration at all? I'm not sure, reading the conversation above.
What I would find best for my scenarios would be if I could set different delay for failed and for succeeded workflows. I would then have much longer delay for failed ones to allow for manual inspection.

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alexec commented Dec 16, 2021

The goal of this PR is to delay all deletion by a minimum amount of time to allow for other services to clean them up. I think you just need normal PodGC.

@tooptoop4 tooptoop4 mentioned this pull request Oct 1, 2022
@agilgur5 agilgur5 added area/gc Garbage collection, such as TTLs, retentionPolicy, delays, and more area/controller Controller issues, panics labels Feb 18, 2024
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6 participants