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HBASE-27649 WALPlayer does not properly dedupe overridden cell versions #5047

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merged 8 commits into from
Feb 25, 2023

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@bbeaudreault bbeaudreault commented Feb 21, 2023

This seems simple enough from a compatibility perspective. I'm adding a new io.serializations, but it should not matter for HFileOutputFormat2 whose output is actually written by StoreFileWriter. It'll only be used in the intermediate output, so is safe to change between deploys.

I chose to create a new ExtendedCellSerialization because it seemed the cleanest way to encapsulate, since others may have used CellSerialization in other contexts. The alternative would be to make CellSerialization implement Configurable, and use that to inject some new configuration which defaults to false. It felt better to skip needing to add a new configuration.

EDIT: I decided to wrap this in a conditional so its exposed to WALPlayer only for now. I realized that someone could have a job which reads Cells from some other sequence file they had created. A job configured by HFileOutputFormat2 would fail to read those if ExtendedCellSerialization were added. So adding to just WALPlayer preserves compatibility, since that job is end-to-end.

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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 29s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
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+1 💚 spotbugs 1m 5s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 10s Maven dependency ordering for patch
+1 💚 mvninstall 4m 37s the patch passed
+1 💚 compile 1m 12s the patch passed
+1 💚 javac 1m 12s the patch passed
+1 💚 checkstyle 0m 24s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 xml 0m 2s The patch has no ill-formed XML file.
+1 💚 hadoopcheck 18m 51s Patch does not cause any errors with Hadoop 3.2.4 3.3.4.
+1 💚 spotless 1m 2s patch has no errors when running spotless:check.
+1 💚 spotbugs 1m 34s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 17s The patch does not generate ASF License warnings.
48m 25s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/3/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #5047
Optional Tests dupname asflicense javac hadoopcheck spotless xml compile spotbugs hbaseanti checkstyle
uname Linux 0a5c4a1c6df5 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 22dbb7a
Default Java Eclipse Adoptium-11.0.17+8
Max. process+thread count 85 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/3/console
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💔 -1 overall

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_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 9s Maven dependency ordering for branch
+1 💚 mvninstall 4m 25s master passed
+1 💚 compile 0m 39s master passed
+1 💚 shadedjars 6m 1s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 29s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 16s Maven dependency ordering for patch
+1 💚 mvninstall 3m 57s the patch passed
+1 💚 compile 0m 38s the patch passed
+1 💚 javac 0m 38s the patch passed
+1 💚 shadedjars 5m 20s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 24s the patch passed
_ Other Tests _
-1 ❌ unit 16m 4s hbase-mapreduce in the patch failed.
+1 💚 unit 10m 34s hbase-backup in the patch passed.
50m 52s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/3/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux f221260b3642 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 22dbb7a
Default Java Temurin-1.8.0_352-b08
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💔 -1 overall

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+0 🆗 reexec 1m 43s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 10s Maven dependency ordering for branch
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+1 💚 javadoc 0m 27s master passed
_ Patch Compile Tests _
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+1 💚 mvninstall 4m 53s the patch passed
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+1 💚 javadoc 0m 27s the patch passed
_ Other Tests _
-1 ❌ unit 22m 39s hbase-mapreduce in the patch failed.
+1 💚 unit 14m 20s hbase-backup in the patch passed.
64m 10s
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Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/3/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux 8f1555c0583a 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:22 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
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Default Java Eclipse Adoptium-11.0.17+8
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 34s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+0 🆗 mvndep 0m 24s Maven dependency ordering for branch
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_ Patch Compile Tests _
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+1 💚 javac 1m 14s the patch passed
+1 💚 checkstyle 0m 24s the patch passed
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+1 💚 xml 0m 2s The patch has no ill-formed XML file.
+1 💚 hadoopcheck 19m 10s Patch does not cause any errors with Hadoop 3.2.4 3.3.4.
+1 💚 spotless 0m 57s patch has no errors when running spotless:check.
+1 💚 spotbugs 1m 36s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 23s The patch does not generate ASF License warnings.
48m 58s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #5047
Optional Tests dupname asflicense javac hadoopcheck spotless xml compile spotbugs hbaseanti checkstyle
uname Linux b88fb45ebc76 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 22dbb7a
Default Java Eclipse Adoptium-11.0.17+8
Max. process+thread count 85 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/console
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 45s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 22s Maven dependency ordering for branch
+1 💚 mvninstall 4m 24s master passed
+1 💚 compile 0m 41s master passed
+1 💚 shadedjars 5m 53s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 33s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for patch
+1 💚 mvninstall 4m 6s the patch passed
+1 💚 compile 0m 38s the patch passed
+1 💚 javac 0m 38s the patch passed
+1 💚 shadedjars 5m 23s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 24s the patch passed
_ Other Tests _
+1 💚 unit 15m 58s hbase-mapreduce in the patch passed.
+1 💚 unit 10m 38s hbase-backup in the patch passed.
51m 14s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux 74eae465b343 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 22dbb7a
Default Java Temurin-1.8.0_352-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/testReport/
Max. process+thread count 3400 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/console
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 40s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 16s Maven dependency ordering for branch
+1 💚 mvninstall 5m 35s master passed
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+1 💚 shadedjars 7m 9s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 41s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for patch
+1 💚 mvninstall 4m 32s the patch passed
+1 💚 compile 0m 48s the patch passed
+1 💚 javac 0m 48s the patch passed
+1 💚 shadedjars 5m 46s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 28s the patch passed
_ Other Tests _
+1 💚 unit 20m 16s hbase-mapreduce in the patch passed.
+1 💚 unit 13m 32s hbase-backup in the patch passed.
63m 17s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux 47867a4cccba 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:22 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 22dbb7a
Default Java Eclipse Adoptium-11.0.17+8
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/testReport/
Max. process+thread count 3045 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/4/console
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Just some minor nits. Overall LGTM.

final byte[] row = Bytes.toBytes("row");
Table table = TEST_UTIL.createTable(tableName, family);

long now = System.currentTimeMillis();
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Use EnvironmentEdgeManager.currentTime if possible

table = TEST_UTIL.truncateTable(tableName);
g = new Get(row);
result = table.get(g);
assertTrue("expected row to be empty after truncate but got " + result, result.isEmpty());
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Use assertThat and Matchers.empty?

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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 24s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for branch
+1 💚 mvninstall 3m 0s master passed
+1 💚 compile 0m 28s master passed
+1 💚 shadedjars 4m 35s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 22s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 11s Maven dependency ordering for patch
+1 💚 mvninstall 2m 49s the patch passed
+1 💚 compile 0m 27s the patch passed
+1 💚 javac 0m 27s the patch passed
+1 💚 shadedjars 4m 32s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 20s the patch passed
_ Other Tests _
+1 💚 unit 13m 25s hbase-mapreduce in the patch passed.
+1 💚 unit 9m 52s hbase-backup in the patch passed.
42m 5s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux 788cbb7235d0 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 36bb0d1
Default Java Temurin-1.8.0_352-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/testReport/
Max. process+thread count 3374 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/console
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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 29s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+0 🆗 mvndep 0m 24s Maven dependency ordering for branch
+1 💚 mvninstall 4m 21s master passed
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+1 💚 spotbugs 1m 0s master passed
_ Patch Compile Tests _
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+1 💚 mvninstall 4m 27s the patch passed
+1 💚 compile 1m 3s the patch passed
+1 💚 javac 1m 3s the patch passed
-0 ⚠️ checkstyle 0m 10s hbase-backup: The patch generated 1 new + 0 unchanged - 0 fixed = 1 total (was 0)
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 xml 0m 1s The patch has no ill-formed XML file.
+1 💚 hadoopcheck 16m 20s Patch does not cause any errors with Hadoop 3.2.4 3.3.4.
+1 💚 spotless 0m 48s patch has no errors when running spotless:check.
-1 ❌ spotbugs 0m 45s hbase-backup generated 1 new + 0 unchanged - 0 fixed = 1 total (was 0)
_ Other Tests _
+1 💚 asflicense 0m 16s The patch does not generate ASF License warnings.
42m 35s
Reason Tests
FindBugs module:hbase-backup
Exception is caught when Exception is not thrown in org.apache.hadoop.hbase.backup.impl.IncrementalTableBackupClient.execute() At IncrementalTableBackupClient.java:is not thrown in org.apache.hadoop.hbase.backup.impl.IncrementalTableBackupClient.execute() At IncrementalTableBackupClient.java:[line 334]
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #5047
Optional Tests dupname asflicense javac hadoopcheck spotless xml compile spotbugs hbaseanti checkstyle
uname Linux b9b9a606002c 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 36bb0d1
Default Java Eclipse Adoptium-11.0.17+8
checkstyle https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/artifact/yetus-general-check/output/diff-checkstyle-hbase-backup.txt
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Max. process+thread count 86 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/console
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🎊 +1 overall

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_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 18s Maven dependency ordering for branch
+1 💚 mvninstall 3m 22s master passed
+1 💚 compile 0m 37s master passed
+1 💚 shadedjars 4m 28s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 28s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for patch
+1 💚 mvninstall 3m 26s the patch passed
+1 💚 compile 0m 36s the patch passed
+1 💚 javac 0m 36s the patch passed
+1 💚 shadedjars 4m 26s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 25s the patch passed
_ Other Tests _
+1 💚 unit 14m 7s hbase-mapreduce in the patch passed.
+1 💚 unit 11m 5s hbase-backup in the patch passed.
46m 5s
Subsystem Report/Notes
Docker ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #5047
Optional Tests javac javadoc unit shadedjars compile
uname Linux fc2345b4aa5c 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:22 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 36bb0d1
Default Java Eclipse Adoptium-11.0.17+8
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/testReport/
Max. process+thread count 3376 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5047/5/console
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checkstyle/spotbugs are in hbase-backups module, which i haven't changed here. Will be handling that in a separate issue. Otherwise pre-commit passing so going to merge. Thanks!

@bbeaudreault bbeaudreault merged commit 82c7dbd into apache:master Feb 25, 2023
@bbeaudreault bbeaudreault deleted the HBASE-27649 branch February 25, 2023 17:10
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Ugh, somehow some temp code got in here in hbase-backup. Going to revert

bbeaudreault added a commit that referenced this pull request Feb 25, 2023
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3 participants