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HBASE-27522 Use reflect to read HDFS ReadStatistics #4917

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cxzl25
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@cxzl25 cxzl25 commented Dec 8, 2022

https://issues.apache.org/jira/browse/HBASE-27522

Use reflection in this PR for better compatibility.

In Hadoop 3.0.0 HDFS-8905, the return value of the getReadStatistics method of class HdfsDataInputStream is modified.

Add the metrics for reading getReadStatistics in HBASE-8868, but use HBase to read HFILE in the Hadoop 3 environment, and an error will be reported in the close reader.

java.lang.NoSuchMethodError: org.apache.hadoop.hdfs.client.HdfsDataInputStream.getReadStatistics()Lorg/apache/hadoop/hdfs/DFSInputStream$ReadStatistics;
	at org.apache.hudi.org.apache.hadoop.hbase.io.FSDataInputStreamWrapper.updateInputStreamStatistics(FSDataInputStreamWrapper.java:249)
	at org.apache.hudi.org.apache.hadoop.hbase.io.FSDataInputStreamWrapper.close(FSDataInputStreamWrapper.java:296)
	at org.apache.hudi.org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.closeStreams(HFileBlock.java:1825)
	at org.apache.hudi.org.apache.hadoop.hbase.io.hfile.HFilePreadReader.close(HFilePreadReader.java:107)
	at org.apache.hudi.org.apache.hadoop.hbase.io.hfile.HFileReaderImpl.close(HFileReaderImpl.java:1421)
	at org.apache.hudi.io.storage.HoodieHFileReader.close(HoodieHFileReader.java:218)
	at org.apache.hudi.table.action.commit.HoodieMergeHelper.runMerge(HoodieMergeHelper.java:152)
	at org.apache.hudi.table.HoodieSparkCopyOnWriteTable.handleUpdateInternal(HoodieSparkCopyOnWriteTable.java:230)
	at org.apache.hudi.table.HoodieSparkCopyOnWriteTable.handleUpdate(HoodieSparkCopyOnWriteTable.java:221)
	at org.apache.hudi.table.action.compact.HoodieCompactor.compact(HoodieCompactor.java:227)
	at org.apache.hudi.table.action.compact.HoodieCompactor.lambda$compact$57154431$1(HoodieCompactor.java:138)

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🎊 +1 overall

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GITHUB PR #4917
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
uname Linux a61875b7dc20 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:22 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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GITHUB PR #4917
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Apache9 commented Dec 9, 2022

Have you tried to depend on the 2.5.2-hadoop3 artifacts? It is compiled with hadoop 3.2.4 which should have fixed the problem.

https://mvnrepository.com/artifact/org.apache.hbase/hbase-client/2.5.2-hadoop3

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jojochuang commented Dec 9, 2022

It looks like your HBase was build with Hadoop 2, but ran with Hadoop 3 runtime. Make sure your build and runtime dependency are the same.

For what is worth, I specifically wrote this part of the code to avoid using reflection.

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IMO this PR is not needed for master branch, because master branch is supposed to depend on Hadoop 3 library only. It would make more sense for branch-2.x

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cxzl25 commented Dec 9, 2022

Have you tried to depend on the 2.5.2-hadoop3 artifacts? It is compiled with hadoop 3.2.4 which should have fixed the problem

Thank you for your reminder, I tested it and it works with 2.5.2-hadoop3.

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cxzl25 commented Dec 9, 2022

It looks like your HBase was build with Hadoop 2, but ran with Hadoop 3 runtime. Make sure your build and runtime dependency are the same.

Yes, Hudi depends on hbase-server 2.4.9, but we use Hudi in Hadoop3, so it caused this exception NoSuchMethodError.

You can find issue 5765 in the Hudi GitHub repository.

For what is worth, I specifically wrote this part of the code to avoid using reflection.

Reflection does have a slight performance penalty.

It would make more sense for branch-2.x

Thank you for the reminder, I now noticed that the master branch only has hadoop3.
Is there any chance we can use reflection to fix this in the 2.4.x and 2.5.x branches ?
If only the read and write api of hfile is used.

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cxzl25 commented Dec 9, 2022

Current

Exception in thread "main" java.lang.NoSuchMethodError: org.apache.hadoop.hdfs.client.HdfsDataInputStream.getReadStatistics()Lorg/apache/hadoop/hdfs/DFSInputStream$ReadStatistics;
	at org.apache.hadoop.hbase.io.FSDataInputStreamWrapper.updateInputStreamStatistics(FSDataInputStreamWrapper.java:249)
	at org.apache.hadoop.hbase.io.FSDataInputStreamWrapper.close(FSDataInputStreamWrapper.java:296)
	at org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.closeStreams(HFileBlock.java:1825)
	at org.apache.hadoop.hbase.io.hfile.HFilePreadReader.close(HFilePreadReader.java:107)
	at org.apache.hadoop.hbase.io.hfile.HFileReaderImpl.close(HFileReaderImpl.java:1421)
	at org.test.TestHFile.main(TestHFile.java:39)

TestHFile

package org.test;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.hbase.KeyValue;
import org.apache.hadoop.hbase.io.hfile.CacheConfig;
import org.apache.hadoop.hbase.io.hfile.HFile;
import org.apache.hadoop.hbase.io.hfile.HFileContext;
import org.apache.hadoop.hbase.io.hfile.HFileContextBuilder;
import org.apache.hadoop.hdfs.MiniDFSCluster;

import java.io.IOException;

public class TestHFile {

  public static void main(String[] args) throws IOException {

    MiniDFSCluster dfsCluster = new MiniDFSCluster.Builder(new Configuration()).build();
    FileSystem fs = dfsCluster.getFileSystem();
    Configuration conf = fs.getConf();

    Path file = new Path("/tmp/test_hbase_file.hfile");

    HFileContext fileContext = new HFileContextBuilder().build();

    CacheConfig cacheConfig = new CacheConfig(conf);
    HFile.Writer writer = HFile.getWriterFactory(conf, cacheConfig)
            .withPath(fs, file)
            .withFileContext(fileContext)
            .create();

    KeyValue kv = new KeyValue("k1".getBytes(), null, null, "v1".getBytes());
    writer.append(kv);
    writer.close();

    HFile.Reader reader = HFile.createReader(fs, file, conf);
    try {
      reader.close();
    } finally {
      dfsCluster.shutdown();
    }
  }
}

pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <groupId>org.example</groupId>
  <artifactId>hbase_hfile_test</artifactId>
  <version>1.0-SNAPSHOT</version>
  <packaging>jar</packaging>

  <name>hbase_hfile_test</name>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <hbase.version>2.4.9</hbase.version>
<!--    <hbase.version>2.5.2-hadoop3</hbase.version>-->
  </properties>

  <profiles>
    <profile>
      <id>hadoop-2.10</id>
      <properties>
        <hadoop.version>2.10.0</hadoop.version>
      </properties>
      <dependencies>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-hdfs</artifactId>
          <version>${hadoop.version}</version>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-hdfs</artifactId>
          <version>${hadoop.version}</version>
          <classifier>tests</classifier>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-common</artifactId>
          <version>${hadoop.version}</version>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-common</artifactId>
          <version>${hadoop.version}</version>
          <classifier>tests</classifier>
        </dependency>
      </dependencies>
    </profile>
    <profile>
      <id>hadoop-3.0</id>
      <properties>
        <hadoop.version>3.0.0</hadoop.version>
      </properties>
      <dependencies>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-hdfs</artifactId>
          <version>${hadoop.version}</version>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-hdfs-client</artifactId>
          <version>${hadoop.version}</version>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-common</artifactId>
          <version>${hadoop.version}</version>
        </dependency>
        <dependency>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-client-minicluster</artifactId>
          <version>${hadoop.version}</version>
          <exclusions>
            <exclusion>
              <groupId>org.apache.hadoop</groupId>
              <artifactId>hadoop-client-api</artifactId>
            </exclusion>
          </exclusions>
        </dependency>
      </dependencies>
    </profile>
  </profiles>

  <dependencies>

    <dependency>
      <groupId>org.apache.hbase</groupId>
      <artifactId>hbase-server</artifactId>
      <version>${hbase.version}</version>
      <exclusions>
        <exclusion>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-hdfs</artifactId>
        </exclusion>
        <exclusion>
          <groupId>org.apache.hadoop</groupId>
          <artifactId>hadoop-common</artifactId>
        </exclusion>
      </exclusions>
    </dependency>

    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.12</version>
    </dependency>
  </dependencies>
</project>

@cxzl25 cxzl25 changed the base branch from master to branch-2 December 12, 2022 04:04
@cxzl25 cxzl25 changed the base branch from branch-2 to master December 12, 2022 04:04
@cxzl25 cxzl25 changed the base branch from master to branch-2 December 12, 2022 04:09
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🎊 +1 overall

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+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
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_ branch-2 Compile Tests _
+1 💚 mvninstall 2m 50s branch-2 passed
+1 💚 compile 2m 26s branch-2 passed
+1 💚 checkstyle 0m 37s branch-2 passed
+1 💚 spotless 0m 42s branch has no errors when running spotless:check.
+1 💚 spotbugs 1m 27s branch-2 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 35s the patch passed
+1 💚 compile 2m 23s the patch passed
+1 💚 javac 2m 23s the patch passed
+1 💚 checkstyle 0m 34s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 hadoopcheck 12m 32s Patch does not cause any errors with Hadoop 2.10.2 or 3.2.4 3.3.4.
+1 💚 spotless 0m 41s patch has no errors when running spotless:check.
+1 💚 spotbugs 1m 35s the patch passed
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30m 47s
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GITHUB PR #4917
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
uname Linux 3d7e15b8b4db 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:22 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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🎊 +1 overall

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+1 💚 shadedjars 4m 7s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 24s branch-2 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 29s the patch passed
+1 💚 compile 0m 40s the patch passed
+1 💚 javac 0m 40s the patch passed
+1 💚 shadedjars 4m 1s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 20s the patch passed
_ Other Tests _
+1 💚 unit 191m 49s hbase-server in the patch passed.
211m 56s
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GITHUB PR #4917
Optional Tests javac javadoc unit shadedjars compile
uname Linux 3a2e5de21200 5.4.0-1092-aws #100~18.04.2-Ubuntu SMP Tue Nov 29 08:39:52 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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🎊 +1 overall

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+1 💚 compile 0m 40s branch-2 passed
+1 💚 shadedjars 3m 42s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 26s branch-2 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 14s the patch passed
+1 💚 compile 0m 41s the patch passed
+1 💚 javac 0m 41s the patch passed
+1 💚 shadedjars 3m 43s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 25s the patch passed
_ Other Tests _
+1 💚 unit 211m 3s hbase-server in the patch passed.
230m 49s
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Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4917/2/artifact/yetus-jdk8-hadoop2-check/output/Dockerfile
GITHUB PR #4917
Optional Tests javac javadoc unit shadedjars compile
uname Linux a70ef8e02414 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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git revision branch-2 / ed53549
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Apache9 commented Dec 19, 2022

As I said above, if you want to use hadoop3, now you can depend on hbase-client 2.5.2-hadoop3. Let's just bump the hbase version in Hudi to solve the problem?

Thanks.

@cxzl25
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cxzl25 commented Dec 20, 2022

As I said above, if you want to use hadoop3, now you can depend on hbase-client 2.5.2-hadoop3. Let's just bump the hbase version in Hudi to solve the problem?

Thank you for comments. @Apache9 @jojochuang
This problem can be solved at the Hudi level.
I will close this PR and JIRA.

@cxzl25 cxzl25 closed this Dec 20, 2022
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