talipot-core/GraphImpl: Simplify node/edge iterators implementation #766
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| name: macos-macports-wheels-build | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| macos: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: Talipot wheels build on macOS x86_64 | |
| os: macos-13 | |
| macosx_deployment_target: "12.0" | |
| - name: Talipot wheels build on macOS arm64 | |
| os: macos-14 | |
| macosx_deployment_target: "14.0" | |
| env: | |
| CLANG_VERSION: 16 | |
| MACOSX_DEPLOYMENT_TARGET: ${{ matrix.config.macosx_deployment_target }} | |
| TWINE_REPOSITORY: https://test.pypi.org/legacy/ | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| steps: | |
| - name: Checkout Talipot code | |
| uses: actions/checkout@v4 | |
| - name: Get wheel next dev version | |
| run: | | |
| JSON=$(curl -s 'https://test.pypi.org/pypi/talipot/json') | |
| LAST_VERSION=$(echo $JSON | python -c " | |
| import sys, json | |
| print(json.load(sys.stdin)['info']['version'])" 2>/dev/null) | |
| if [ $? -ne 0 ] | |
| then | |
| DEV_VERSION=1 | |
| else | |
| echo last wheel dev version = $LAST_VERSION | |
| # check if dev wheel version needs to be incremented | |
| VERSION_INCREMENT=$(echo $JSON | python -c " | |
| import sys, json, platform | |
| releases = json.load(sys.stdin)['releases']['$LAST_VERSION'] | |
| machine = platform.uname().machine | |
| print(any(['macosx' in r['filename'] and machine in r['filename'] for r in releases]))") | |
| DEV_VERSION=$(echo $LAST_VERSION | cut -f4 -d '.' | sed 's/dev//') | |
| if [ "$VERSION_INCREMENT" == "True" ] | |
| then | |
| let DEV_VERSION+=1 | |
| fi | |
| fi | |
| echo current wheel dev version = $DEV_VERSION | |
| echo "DEV_VERSION=$DEV_VERSION" >> $GITHUB_ENV | |
| - name: Prepare ccache timestamp | |
| id: get-current-date | |
| run: | | |
| echo "date=$(date -u "+%Y-%m-%d-%H-%m-%S")" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache files | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| /Users/runner/Library/Caches/ccache | |
| /Users/runner/.macports-ci-ccache | |
| key: macos-wheels-ccache-${{ steps.get-current-date.outputs.date }} | |
| restore-keys: | | |
| ${{ matrix.config.os }}-ccache- | |
| save-always: true | |
| - name: Install MacPorts | |
| run: | | |
| curl -LO https://raw.githubusercontent.com/GiovanniBussi/macports-ci/master/macports-ci | |
| source ./macports-ci install | |
| - name: Install Talipot build dependencies | |
| run: sudo port -N install | |
| cmake | |
| clang-${{ env.CLANG_VERSION }} | |
| bison | |
| zlib | |
| zstd | |
| libomp | |
| qhull | |
| yajl | |
| libgit2 | |
| graphviz | |
| - name: Install Python versions to build wheels against | |
| run: | | |
| os_ver=$(sw_vers -productVersion | cut -c1-2) | |
| if [[ $os_ver -lt 13 ]]; then | |
| curl -LO https://www.python.org/ftp/python/3.9.0/python-3.9.0-macosx10.9.pkg | |
| sudo installer -pkg python-3.9.0-macosx10.9.pkg -target / | |
| sudo /Library/Frameworks/Python.framework/Versions/3.9/bin/pip3 install wheel | |
| fi | |
| curl -LO https://www.python.org/ftp/python/3.10.10/python-3.10.10-macos11.pkg | |
| sudo installer -pkg python-3.10.10-macos11.pkg -target / | |
| sudo /Library/Frameworks/Python.framework/Versions/3.10/bin/pip3 install wheel | |
| curl -LO https://www.python.org/ftp/python/3.11.0/python-3.11.0-macos11.pkg | |
| sudo installer -pkg python-3.11.0-macos11.pkg -target / | |
| sudo /Library/Frameworks/Python.framework/Versions/3.11/bin/pip3 install wheel | |
| curl -LO https://www.python.org/ftp/python/3.12.7/python-3.12.7-macos11.pkg | |
| sudo installer -pkg python-3.12.7-macos11.pkg -target / | |
| sudo /Library/Frameworks/Python.framework/Versions/3.12/bin/pip3 install wheel | |
| curl -LO https://www.python.org/ftp/python/3.13.0/python-3.13.0-macos11.pkg | |
| sudo installer -pkg python-3.13.0-macos11.pkg -target / | |
| sudo /Library/Frameworks/Python.framework/Versions/3.13/bin/pip3 install wheel twine | |
| - name: Create build directory | |
| run: mkdir build | |
| - name: Build Talipot Python wheels | |
| working-directory: ./build | |
| run: | | |
| os_ver=$(sw_vers -productVersion | cut -c1-2) | |
| if [[ $os_ver -lt 13 ]]; then | |
| py3Versions="3.9 3.10 3.11 3.12 3.13" | |
| else | |
| py3Versions="3.10 3.11 3.12 3.13" | |
| fi | |
| for py3Version in $py3Versions | |
| do | |
| rm -f CMakeCache.txt || true | |
| sudo /Library/Frameworks/Python.framework/Versions/$py3Version/bin/pip3 install sip | |
| cmake .. -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=$PWD/install \ | |
| -DCMAKE_C_COMPILER=/opt/local/bin/clang-mp-${{ env.CLANG_VERSION }} \ | |
| -DCMAKE_CXX_COMPILER=/opt/local/bin/clang++-mp-${{ env.CLANG_VERSION }} \ | |
| -DTALIPOT_ACTIVATE_PYTHON_WHEEL_TARGET=ON \ | |
| -DTALIPOT_PYTHON_TEST_WHEEL_SUFFIX=a3.dev${{ env.DEV_VERSION }}\ | |
| -DPython3_EXECUTABLE=/Library/Frameworks/Python.framework/Versions/$py3Version/bin/python3 \ | |
| -DTALIPOT_USE_CCACHE=ON \ | |
| -DTALIPOT_BUILD_CORE_ONLY=ON \ | |
| -DTALIPOT_BUILD_DOC=OFF | |
| make -j4 test-wheel | |
| done | |
| - name: Upload Talipot Python wheels on test PyPI | |
| if: github.ref == 'refs/tags/dev-latest' | |
| working-directory: ./build | |
| run: make test-wheel-upload | |
| - name: Test uploaded wheels in clean environment | |
| if: github.ref == 'refs/tags/dev-latest' | |
| run: | | |
| os_ver=$(sw_vers -productVersion | cut -c1-2) | |
| sudo port -N -f uninstall \ | |
| cmake \ | |
| clang-${CLANG_VERSION} \ | |
| qhull \ | |
| yajl \ | |
| libgit2 \ | |
| graphviz | |
| sudo port -N install \ | |
| python39 \ | |
| py39-pip \ | |
| python310 \ | |
| py310-pip \ | |
| python311 \ | |
| py311-pip \ | |
| python312 \ | |
| py312-pip \ | |
| python313 \ | |
| py313-pip | |
| if [[ $os_ver -lt 13 ]]; then | |
| sudo pip-3.9 install --index-url https://test.pypi.org/simple/ talipot | |
| python3.9 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
| python3.9 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
| fi | |
| sudo pip-3.10 install --index-url https://test.pypi.org/simple/ talipot | |
| python3.10 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
| python3.10 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
| sudo pip-3.11 install --index-url https://test.pypi.org/simple/ talipot | |
| python3.11 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
| python3.11 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
| sudo pip-3.12 install --index-url https://test.pypi.org/simple/ talipot | |
| python3.12 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
| python3.12 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
| sudo pip-3.13 install --index-url https://test.pypi.org/simple/ talipot | |
| python3.13 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
| python3.13 -c "from talipot import tlp; print(tlp.getImportPluginsList())" |