plugins/LeafMetric: Simplify code with new Graph::dfs method variant #751
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name: macos-macports-wheels-build | |
on: [push, pull_request] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
macos: | |
name: ${{ matrix.config.name }} | |
runs-on: ${{ matrix.config.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- name: Talipot wheels build on macOS x86_64 | |
os: macos-13 | |
macosx_deployment_target: "12.0" | |
- name: Talipot wheels build on macOS arm64 | |
os: macos-14 | |
macosx_deployment_target: "14.0" | |
env: | |
CLANG_VERSION: 16 | |
MACOSX_DEPLOYMENT_TARGET: ${{ matrix.config.macosx_deployment_target }} | |
TWINE_REPOSITORY: https://test.pypi.org/legacy/ | |
TWINE_USERNAME: __token__ | |
TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
steps: | |
- name: Checkout Talipot code | |
uses: actions/checkout@v4 | |
- name: Get wheel next dev version | |
run: | | |
JSON=$(curl -s 'https://test.pypi.org/pypi/talipot/json') | |
LAST_VERSION=$(echo $JSON | python -c " | |
import sys, json | |
print(json.load(sys.stdin)['info']['version'])" 2>/dev/null) | |
if [ $? -ne 0 ] | |
then | |
DEV_VERSION=1 | |
else | |
echo last wheel dev version = $LAST_VERSION | |
# check if dev wheel version needs to be incremented | |
VERSION_INCREMENT=$(echo $JSON | python -c " | |
import sys, json, platform | |
releases = json.load(sys.stdin)['releases']['$LAST_VERSION'] | |
machine = platform.uname().machine | |
print(any(['macosx' in r['filename'] and machine in r['filename'] for r in releases]))") | |
DEV_VERSION=$(echo $LAST_VERSION | cut -f4 -d '.' | sed 's/dev//') | |
if [ "$VERSION_INCREMENT" == "True" ] | |
then | |
let DEV_VERSION+=1 | |
fi | |
fi | |
echo current wheel dev version = $DEV_VERSION | |
echo "DEV_VERSION=$DEV_VERSION" >> $GITHUB_ENV | |
- name: Prepare ccache timestamp | |
id: get-current-date | |
run: | | |
echo "date=$(date -u "+%Y-%m-%d-%H-%m-%S")" >> $GITHUB_OUTPUT | |
shell: bash | |
- name: Cache files | |
uses: actions/cache@v4 | |
with: | |
path: | | |
/Users/runner/Library/Caches/ccache | |
/Users/runner/.macports-ci-ccache | |
key: macos-wheels-ccache-${{ steps.get-current-date.outputs.date }} | |
restore-keys: | | |
${{ matrix.config.os }}-ccache- | |
save-always: true | |
- name: Install MacPorts | |
run: | | |
curl -LO https://raw.githubusercontent.com/GiovanniBussi/macports-ci/master/macports-ci | |
source ./macports-ci install | |
- name: Install Talipot build dependencies | |
run: sudo port -N install | |
cmake | |
clang-${{ env.CLANG_VERSION }} | |
bison | |
zlib | |
zstd | |
libomp | |
qhull | |
yajl | |
libgit2 | |
graphviz | |
- name: Install Python versions to build wheels against | |
run: | | |
os_ver=$(sw_vers -productVersion | cut -c1-2) | |
if [[ $os_ver -lt 13 ]]; then | |
curl -LO https://www.python.org/ftp/python/3.9.0/python-3.9.0-macosx10.9.pkg | |
sudo installer -pkg python-3.9.0-macosx10.9.pkg -target / | |
sudo /Library/Frameworks/Python.framework/Versions/3.9/bin/pip3 install wheel | |
fi | |
curl -LO https://www.python.org/ftp/python/3.10.10/python-3.10.10-macos11.pkg | |
sudo installer -pkg python-3.10.10-macos11.pkg -target / | |
sudo /Library/Frameworks/Python.framework/Versions/3.10/bin/pip3 install wheel | |
curl -LO https://www.python.org/ftp/python/3.11.0/python-3.11.0-macos11.pkg | |
sudo installer -pkg python-3.11.0-macos11.pkg -target / | |
sudo /Library/Frameworks/Python.framework/Versions/3.11/bin/pip3 install wheel | |
curl -LO https://www.python.org/ftp/python/3.12.7/python-3.12.7-macos11.pkg | |
sudo installer -pkg python-3.12.7-macos11.pkg -target / | |
sudo /Library/Frameworks/Python.framework/Versions/3.12/bin/pip3 install wheel | |
curl -LO https://www.python.org/ftp/python/3.13.0/python-3.13.0-macos11.pkg | |
sudo installer -pkg python-3.13.0-macos11.pkg -target / | |
sudo /Library/Frameworks/Python.framework/Versions/3.13/bin/pip3 install wheel twine | |
- name: Create build directory | |
run: mkdir build | |
- name: Build Talipot Python wheels | |
working-directory: ./build | |
run: | | |
os_ver=$(sw_vers -productVersion | cut -c1-2) | |
if [[ $os_ver -lt 13 ]]; then | |
py3Versions="3.9 3.10 3.11 3.12 3.13" | |
else | |
py3Versions="3.10 3.11 3.12 3.13" | |
fi | |
for py3Version in $py3Versions | |
do | |
rm -f CMakeCache.txt || true | |
sudo /Library/Frameworks/Python.framework/Versions/$py3Version/bin/pip3 install sip | |
cmake .. -DCMAKE_BUILD_TYPE=Release \ | |
-DCMAKE_INSTALL_PREFIX=$PWD/install \ | |
-DCMAKE_C_COMPILER=/opt/local/bin/clang-mp-${{ env.CLANG_VERSION }} \ | |
-DCMAKE_CXX_COMPILER=/opt/local/bin/clang++-mp-${{ env.CLANG_VERSION }} \ | |
-DTALIPOT_ACTIVATE_PYTHON_WHEEL_TARGET=ON \ | |
-DTALIPOT_PYTHON_TEST_WHEEL_SUFFIX=a3.dev${{ env.DEV_VERSION }}\ | |
-DPython3_EXECUTABLE=/Library/Frameworks/Python.framework/Versions/$py3Version/bin/python3 \ | |
-DTALIPOT_USE_CCACHE=ON \ | |
-DTALIPOT_BUILD_CORE_ONLY=ON \ | |
-DTALIPOT_BUILD_DOC=OFF | |
make -j4 test-wheel | |
done | |
- name: Upload Talipot Python wheels on test PyPI | |
if: github.ref == 'refs/tags/dev-latest' | |
working-directory: ./build | |
run: make test-wheel-upload | |
- name: Test uploaded wheels in clean environment | |
if: github.ref == 'refs/tags/dev-latest' | |
run: | | |
os_ver=$(sw_vers -productVersion | cut -c1-2) | |
sudo port -N -f uninstall \ | |
cmake \ | |
clang-${CLANG_VERSION} \ | |
qhull \ | |
yajl \ | |
libgit2 \ | |
graphviz | |
sudo port -N install \ | |
python39 \ | |
py39-pip \ | |
python310 \ | |
py310-pip \ | |
python311 \ | |
py311-pip \ | |
python312 \ | |
py312-pip \ | |
python313 \ | |
py313-pip | |
if [[ $os_ver -lt 13 ]]; then | |
sudo pip-3.9 install --index-url https://test.pypi.org/simple/ talipot | |
python3.9 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
python3.9 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
fi | |
sudo pip-3.10 install --index-url https://test.pypi.org/simple/ talipot | |
python3.10 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
python3.10 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
sudo pip-3.11 install --index-url https://test.pypi.org/simple/ talipot | |
python3.11 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
python3.11 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
sudo pip-3.12 install --index-url https://test.pypi.org/simple/ talipot | |
python3.12 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
python3.12 -c "from talipot import tlp; print(tlp.getImportPluginsList())" | |
sudo pip-3.13 install --index-url https://test.pypi.org/simple/ talipot | |
python3.13 -c "from talipot import tlp; print(tlp.getLayoutAlgorithmPluginsList())" | |
python3.13 -c "from talipot import tlp; print(tlp.getImportPluginsList())" |